RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 ARFGEF2Q9Y6D5 1785 aa11.63□□□□□ -0.55
TRAF1-202ENST00000540010 G3V3G9 751 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 ITPK1Q13572 414 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 PKP1Q13835 747 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 ADCK5Q3MIX3 580 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 DCAF8Q5TAQ9 597 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 CCDC82Q8N4S0 544 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 NUP133Q8WUM0 1156 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 MAP4K1Q92918 833 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 SH2B1Q9NRF2 756 aaPredicted RBP11.62□□□□□ -0.55
TRAF1-202ENST00000540010 FBXO3Q9UK99 471 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 EIF5P55010 431 aaKnown RBP11.62□□□□□ -0.55
TRAF1-202ENST00000540010 UBE2HP62256 183 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 NOLC1Q14978 699 aaKnown RBP eCLIP11.62□□□□□ -0.55
TRAF1-202ENST00000540010 PARP10Q53GL7 1025 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 ISM2Q6H9L7 571 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 CCDC47Q96A33 483 aaKnown RBP11.62□□□□□ -0.55
TRAF1-202ENST00000540010 TRERF1Q96PN7 1200 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 CDHR2Q9BYE9 1310 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 SFPQP23246 707 aaKnown RBP eCLIP11.62□□□□□ -0.55
TRAF1-202ENST00000540010 SART3Q15020 963 aaKnown RBP11.62□□□□□ -0.55
TRAF1-202ENST00000540010 VPS72Q15906 364 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 CCDC152Q4G0S7 254 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 HMG20BQ9P0W2 317 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 IGSF3O75054 1194 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 DDIT3P35638 169 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 SUSD4Q5VX71 490 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 CAGE1Q8TC20 777 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 CEP89Q96ST8 783 aa11.62□□□□□ -0.55
TRAF1-202ENST00000540010 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.62□□□□□ -0.55
TRAF1-202ENST00000540010 LTBP4Q8N2S1 1624 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 IDH1O75874 414 aaKnown RBP11.61□□□□□ -0.55
TRAF1-202ENST00000540010 DNM1Q05193 864 aaKnown RBP11.61□□□□□ -0.55
TRAF1-202ENST00000540010 RUFY3Q7L099 469 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 INTS4Q96HW7 963 aaKnown RBP11.61□□□□□ -0.55
TRAF1-202ENST00000540010 PLA2G12BQ9BX93 195 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 RBSNQ9H1K0 784 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 XBP1P17861 261 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 INTS5Q6P9B9 1019 aaKnown RBP11.61□□□□□ -0.55
TRAF1-202ENST00000540010 RUFY1Q96T51 708 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 LRRC2Q9BYS8 371 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 RNF113AO15541 343 aaKnown RBP11.61□□□□□ -0.55
TRAF1-202ENST00000540010 ZPR1O75312 459 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 TAF5LO75529 589 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 CSF1RP07333 972 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 MCM5P33992 734 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 NECTIN1Q15223 517 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 FILIP1LQ4L180 1135 aa11.61□□□□□ -0.55
TRAF1-202ENST00000540010 DYNC1I1O14576 645 aa11.6□□□□□ -0.55
TRAF1-202ENST00000540010 CHGBP05060 677 aa11.6□□□□□ -0.55
TRAF1-202ENST00000540010 ZSCAN22P10073 491 aaPredicted RBP11.6□□□□□ -0.55
TRAF1-202ENST00000540010 RAB11FIP4Q86YS3 637 aa11.6□□□□□ -0.55
TRAF1-202ENST00000540010 URI1O94763 535 aaPredicted RBP11.6□□□□□ -0.55
TRAF1-202ENST00000540010 SLC5A1P13866 664 aa11.6□□□□□ -0.55
TRAF1-202ENST00000540010 CCDC186Q7Z3E2 898 aa11.6□□□□□ -0.55
TRAF1-202ENST00000540010 KIF18AQ8NI77 898 aa11.6□□□□□ -0.55
TRAF1-202ENST00000540010 ZNF34Q8IZ26 560 aa11.6□□□□□ -0.55
TRAF1-202ENST00000540010 UBN2Q6ZU65 1347 aa11.6□□□□□ -0.55
TRAF1-202ENST00000540010 ZAP70P43403 619 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 SLFNL1Q499Z3 407 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 PPFIBP1Q86W92 1011 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 PIBF1Q8WXW3 757 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 NEK1Q96PY6 1258 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 TM6SF1Q9BZW5 370 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 TMX1Q9H3N1 280 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 ACBD3Q9H3P7 528 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 HELLSQ9NRZ9 838 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 AK9Q5TCS8 1911 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 ZSWIM6Q9HCJ5 1215 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 CCNL1Q9UK58 526 aaPredicted RBP11.59□□□□□ -0.55
TRAF1-202ENST00000540010 GNPATO15228 680 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 OFD1O75665 1012 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 CUL4AQ13619 759 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 AXDND1Q5T1B0 1012 aaPredicted RBP11.59□□□□□ -0.55
TRAF1-202ENST00000540010 ZSCAN25Q6NSZ9 544 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 BRMS1Q9HCU9 246 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 CCP110O43303 1012 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 TRIM22Q8IYM9 498 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 ANO10Q9NW15 660 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 TOGARAM1Q9Y4F4 1720 aa11.59□□□□□ -0.55
TRAF1-202ENST00000540010 COL16A1Q07092 1604 aaPredicted RBP11.58□□□□□ -0.56
TRAF1-202ENST00000540010 POLR3DP05423 398 aaPredicted RBP11.58□□□□□ -0.56
TRAF1-202ENST00000540010 SETQ01105 290 aaPredicted RBP11.58□□□□□ -0.56
TRAF1-202ENST00000540010 FSIP1Q8NA03 581 aa11.58□□□□□ -0.56
TRAF1-202ENST00000540010 DACT1Q9NYF0 836 aa11.58□□□□□ -0.56
TRAF1-202ENST00000540010 PDE8BO95263 885 aa11.58□□□□□ -0.56
TRAF1-202ENST00000540010 ZFYP08048 801 aaPredicted RBP11.58□□□□□ -0.56
TRAF1-202ENST00000540010 PUM3Q15397 648 aaKnown RBP11.58□□□□□ -0.56
TRAF1-202ENST00000540010 KLHL10Q6JEL2 608 aa11.58□□□□□ -0.56
TRAF1-202ENST00000540010 PI16Q6UXB8 463 aa11.58□□□□□ -0.56
TRAF1-202ENST00000540010 CHAMP1Q96JM3 812 aa11.58□□□□□ -0.56
TRAF1-202ENST00000540010 CDC5LQ99459 802 aaKnown RBP11.58□□□□□ -0.56
TRAF1-202ENST00000540010 SEC31BQ9NQW1 1179 aa11.58□□□□□ -0.56
TRAF1-202ENST00000540010 CGNQ9P2M7 1197 aaKnown RBP11.58□□□□□ -0.56
TRAF1-202ENST00000540010 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.58□□□□□ -0.56
TRAF1-202ENST00000540010 V9GYY5 206 aaPredicted RBP11.58□□□□□ -0.56
TRAF1-202ENST00000540010 ZNF609O15014 1411 aa11.58□□□□□ -0.56
TRAF1-202ENST00000540010 CAMTA2O94983 1202 aa11.58□□□□□ -0.56
TRAF1-202ENST00000540010 POLR3GO15318 223 aaPredicted RBP11.57□□□□□ -0.56
TRAF1-202ENST00000540010 AMOTL1Q8IY63 956 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms