RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TUT1Q9H6E5 874 aaKnown RBP7.3□□□□□ -1.24
CD44-235ENST00000532339 ZFYVE28Q9HCC9 887 aa7.3□□□□□ -1.24
CD44-235ENST00000532339 BRPF3Q9ULD4 1205 aa7.3□□□□□ -1.24
CD44-235ENST00000532339 SOX13Q9UN79 622 aa7.3□□□□□ -1.24
CD44-235ENST00000532339 PDS5BQ9NTI5 1447 aa7.29□□□□□ -1.24
CD44-235ENST00000532339 SERPINB4P48594 390 aa7.29□□□□□ -1.24
CD44-235ENST00000532339 KIAA1211Q6ZU35 1233 aa7.29□□□□□ -1.24
CD44-235ENST00000532339 SLC51AQ86UW1 340 aa7.29□□□□□ -1.24
CD44-235ENST00000532339 FOXD4L4Q8WXT5 416 aaPredicted RBP7.29□□□□□ -1.24
CD44-235ENST00000532339 ARAP1Q96P48 1450 aa7.29□□□□□ -1.24
CD44-235ENST00000532339 LAMC3Q9Y6N6 1575 aa7.29□□□□□ -1.24
CD44-235ENST00000532339 DDX3YO15523 660 aaKnown RBP7.28□□□□□ -1.24
CD44-235ENST00000532339 ADAM11O75078 769 aa7.28□□□□□ -1.24
CD44-235ENST00000532339 UVSSAQ2YD98 709 aa7.28□□□□□ -1.24
CD44-235ENST00000532339 ARTNQ5T4W7 220 aa7.28□□□□□ -1.24
CD44-235ENST00000532339 UBASH3BQ8TF42 649 aa7.28□□□□□ -1.24
CD44-235ENST00000532339 SLC7A3Q8WY07 619 aa7.28□□□□□ -1.24
CD44-235ENST00000532339 UBL7Q96S82 380 aaPredicted RBP7.28□□□□□ -1.24
CD44-235ENST00000532339 BHLHE41Q9C0J9 482 aaPredicted RBP7.28□□□□□ -1.24
CD44-235ENST00000532339 ZFP64Q9NPA5 681 aa7.28□□□□□ -1.24
CD44-235ENST00000532339 DHX15O43143 795 aaKnown RBP7.27□□□□□ -1.25
CD44-235ENST00000532339 NDUFB5O43674 189 aa7.27□□□□□ -1.25
CD44-235ENST00000532339 NEFLP07196 543 aa7.27□□□□□ -1.25
CD44-235ENST00000532339 FSTP19883 344 aa7.27□□□□□ -1.25
CD44-235ENST00000532339 C19orf57Q0VDD7 668 aa7.27□□□□□ -1.25
CD44-235ENST00000532339 RETREG2Q8NC44 543 aa7.27□□□□□ -1.25
CD44-235ENST00000532339 RAXQ9Y2V3 346 aa7.27□□□□□ -1.25
CD44-235ENST00000532339 WDR62O43379 1518 aa7.27□□□□□ -1.25
CD44-235ENST00000532339 KIF21AQ7Z4S6 1674 aa7.26□□□□□ -1.25
CD44-235ENST00000532339 MRC2Q9UBG0 1479 aa7.26□□□□□ -1.25
CD44-235ENST00000532339 NLRP12P59046 1061 aa7.26□□□□□ -1.25
CD44-235ENST00000532339 LRP8Q14114 963 aa7.26□□□□□ -1.25
CD44-235ENST00000532339 IKBKEQ14164 716 aa7.26□□□□□ -1.25
CD44-235ENST00000532339 PEAR1Q5VY43 1037 aaPredicted RBP7.26□□□□□ -1.25
CD44-235ENST00000532339 VN1R5Q7Z5H4 357 aa7.26□□□□□ -1.25
CD44-235ENST00000532339 ASAP3Q8TDY4 903 aa7.26□□□□□ -1.25
CD44-235ENST00000532339 UTP4Q969X6 686 aaKnown RBP7.26□□□□□ -1.25
CD44-235ENST00000532339 RNF208Q9H0X6 261 aa7.26□□□□□ -1.25
CD44-235ENST00000532339 LATS2Q9NRM7 1088 aa7.26□□□□□ -1.25
CD44-235ENST00000532339 STOML1Q9UBI4 398 aa7.26□□□□□ -1.25
CD44-235ENST00000532339 RNF112Q9ULX5 631 aa7.26□□□□□ -1.25
CD44-235ENST00000532339 GSC2O15499 205 aa7.25□□□□□ -1.25
CD44-235ENST00000532339 PDE3BQ13370 1112 aa7.25□□□□□ -1.25
CD44-235ENST00000532339 ECM1Q16610 540 aa7.25□□□□□ -1.25
CD44-235ENST00000532339 ANKRD34AQ69YU3 496 aa7.25□□□□□ -1.25
CD44-235ENST00000532339 TXNDC2Q86VQ3 553 aa7.25□□□□□ -1.25
CD44-235ENST00000532339 ARMC10Q8N2F6 343 aa7.25□□□□□ -1.25
CD44-235ENST00000532339 FAM46AQ96IP4 442 aaKnown RBP7.25□□□□□ -1.25
CD44-235ENST00000532339 RUSC1Q9BVN2 902 aa7.25□□□□□ -1.25
CD44-235ENST00000532339 SOX1O00570 391 aaPredicted RBP7.24□□□□□ -1.25
CD44-235ENST00000532339 SART1O43290 800 aaKnown RBP7.24□□□□□ -1.25
CD44-235ENST00000532339 EIF4EBP3O60516 100 aaPredicted RBP7.24□□□□□ -1.25
CD44-235ENST00000532339 POLR3DP05423 398 aaPredicted RBP7.24□□□□□ -1.25
CD44-235ENST00000532339 ARHGAP4P98171 946 aa7.24□□□□□ -1.25
CD44-235ENST00000532339 GALNT12Q8IXK2 581 aa7.24□□□□□ -1.25
CD44-235ENST00000532339 CCER1Q8TC90 406 aaPredicted RBP7.24□□□□□ -1.25
CD44-235ENST00000532339 CITED4Q96RK1 184 aa7.24□□□□□ -1.25
CD44-235ENST00000532339 SOX17Q9H6I2 414 aaPredicted RBP7.24□□□□□ -1.25
CD44-235ENST00000532339 MEGF11A6BM72 1044 aa7.23□□□□□ -1.25
CD44-235ENST00000532339 FDX2Q6P4F2 183 aa7.23□□□□□ -1.25
CD44-235ENST00000532339 NBPF11Q86T75 865 aa7.23□□□□□ -1.25
CD44-235ENST00000532339 MYRFLQ96LU7 910 aa7.23□□□□□ -1.25
CD44-235ENST00000532339 ERCC6L2Q5T890 1561 aa7.22□□□□□ -1.25
CD44-235ENST00000532339 IGLV1-40P01703 118 aa7.22□□□□□ -1.25
CD44-235ENST00000532339 ESRRAP11474 423 aaPredicted RBP7.22□□□□□ -1.25
CD44-235ENST00000532339 HGSNATQ68CP4 663 aa7.22□□□□□ -1.25
CD44-235ENST00000532339 FAM129BQ96TA1 746 aa7.22□□□□□ -1.25
CD44-235ENST00000532339 A0A1W2PP55 124 aa7.21□□□□□ -1.26
CD44-235ENST00000532339 METTL12A8MUP2 240 aa7.21□□□□□ -1.26
CD44-235ENST00000532339 HYAL3O43820 417 aaPredicted RBP7.21□□□□□ -1.26
CD44-235ENST00000532339 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.21□□□□□ -1.26
CD44-235ENST00000532339 CCNJLQ8IV13 435 aa7.21□□□□□ -1.26
CD44-235ENST00000532339 LIN7BQ9HAP6 207 aa7.21□□□□□ -1.26
CD44-235ENST00000532339 HIF3AQ9Y2N7 669 aa7.21□□□□□ -1.26
CD44-235ENST00000532339 A0A096LPE4 126 aa7.2□□□□□ -1.26
CD44-235ENST00000532339 A0A1W2PPZ6 126 aa7.2□□□□□ -1.26
CD44-235ENST00000532339 CPNE3O75131 537 aaKnown RBP7.2□□□□□ -1.26
CD44-235ENST00000532339 PREPP48147 710 aa7.2□□□□□ -1.26
CD44-235ENST00000532339 NUTM2GQ5VZR2 741 aa7.2□□□□□ -1.26
CD44-235ENST00000532339 CLEC10AQ8IUN9 316 aa7.2□□□□□ -1.26
CD44-235ENST00000532339 FAM20CQ8IXL6 584 aa7.2□□□□□ -1.26
CD44-235ENST00000532339 TMC1Q8TDI8 760 aa7.2□□□□□ -1.26
CD44-235ENST00000532339 USP26Q9BXU7 913 aa7.2□□□□□ -1.26
CD44-235ENST00000532339 C7orf69Q9H7B7 122 aa7.2□□□□□ -1.26
CD44-235ENST00000532339 HMGXB3Q12766 1538 aa7.2□□□□□ -1.26
CD44-235ENST00000532339 DCAF1Q9Y4B6 1507 aa7.2□□□□□ -1.26
CD44-235ENST00000532339 ATAD2BQ9ULI0 1458 aa7.19□□□□□ -1.26
CD44-235ENST00000532339 LOC100289279A0A1B0GTE1 492 aa7.19□□□□□ -1.26
CD44-235ENST00000532339 GAS2O43903 313 aaKnown RBP7.19□□□□□ -1.26
CD44-235ENST00000532339 BMP3P12645 472 aa7.19□□□□□ -1.26
CD44-235ENST00000532339 GSTM4Q03013 218 aa7.19□□□□□ -1.26
CD44-235ENST00000532339 PCDH1Q08174 1060 aa7.19□□□□□ -1.26
CD44-235ENST00000532339 NFIAQ12857 509 aa7.19□□□□□ -1.26
CD44-235ENST00000532339 KIAA0319Q5VV43 1072 aa7.19□□□□□ -1.26
CD44-235ENST00000532339 USPL1Q5W0Q7 1092 aa7.19□□□□□ -1.26
CD44-235ENST00000532339 TCF12Q99081 682 aa7.19□□□□□ -1.26
CD44-235ENST00000532339 TMPRSS13Q9BYE2 586 aa7.19□□□□□ -1.26
CD44-235ENST00000532339 CLEC4MQ9H2X3 399 aaPredicted RBP7.19□□□□□ -1.26
CD44-235ENST00000532339 KCNF1Q9H3M0 494 aa7.19□□□□□ -1.26
CD44-235ENST00000532339 CYP4F12Q9HCS2 524 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms