RNA–Protein interactions for RNA: ENST00000515854.5

ATP2C1-223, Transcript of ATPase secretory pathway Ca2+ transporting 1, human

TSL 4

Gene ATP2C1, Length 561 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATP2C1-223	ENST00000515854	NECTIN1	Q15223	517 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	ERFE	Q4G0M1	354 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	CCDC158	Q5M9N0	1113 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	TRAPPC3L	Q5T215	181 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	AMIGO3	Q86WK7	504 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	MAP4K1	Q92918	833 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	KHSRP	Q92945	711 aa	Known RBP eCLIP	5.41	□□□□□ -1.54	9e-7	■■■■□ 19.8
ATP2C1-223	ENST00000515854	DNAJC2	Q99543	621 aa	Known RBP	5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	NYX	Q9GZU5	481 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	SEC31B	Q9NQW1	1179 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	CNNM1	Q9NRU3	951 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	PAG1	Q9NWQ8	432 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	CHMP5	Q9NZZ3	219 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	SRP68	Q9UHB9	627 aa	Known RBP	5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	SNX14	Q9Y5W7	946 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	LAMB2	P55268	1798 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	CCDC171	Q6TFL3	1326 aa		5.41	□□□□□ -1.54
ATP2C1-223	ENST00000515854	KAT6B	Q8WYB5	2073 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	GOLIM4	O00461	696 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	TAF5L	O75529	589 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	SSFA2	P28290	1259 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	ARID4A	P29374	1257 aa	Predicted RBP	5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	IGHMBP2	P38935	993 aa	Known RBP	5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	MCM2	P49736	904 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	NEK4	P51957	841 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	PUM3	Q15397	648 aa	Known RBP	5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	MCMDC2	Q4G0Z9	681 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	TTC39A	Q5SRH9	613 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	ZMYM1	Q5SVZ6	1142 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	GORAB	Q5T7V8	394 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	TPTE2	Q6XPS3	522 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	BICDL1	Q6ZP65	573 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	DDX46	Q7L014	1031 aa	Known RBP	5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	LPIN2	Q92539	896 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	SETDB2	Q96T68	719 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	CDC5L	Q99459	802 aa	Known RBP	5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	MPHOSPH8	Q99549	860 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	TM6SF1	Q9BZW5	370 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	SLK	Q9H2G2	1235 aa	Predicted RBP	5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	HELLS	Q9NRZ9	838 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	RBM8A	Q9Y5S9	174 aa	Known RBP	5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	NDUFB9	Q9Y6M9	179 aa		5.4	□□□□□ -1.54
ATP2C1-223	ENST00000515854	COL24A1	Q17RW2	1714 aa		5.4	□□□□□ -1.55
ATP2C1-223	ENST00000515854	TAF1L	Q8IZX4	1826 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	SPEF2	Q9C093	1822 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	MYH3	P11055	1940 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	AK9	Q5TCS8	1911 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	PLSCR1	O15162	318 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	RNF113A	O15541	343 aa	Known RBP	5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	TRIM37	O94972	964 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	ZFY	P08048	801 aa	Predicted RBP	5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	UQCRFS1P1	P0C7P4	283 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	SLC5A1	P13866	664 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	RFC4	P35249	363 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	ZAP70	P43403	619 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	CUL4A	Q13619	759 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	SCARF1	Q14162	830 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	NFKBIB	Q15653	356 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	TXNRD1	Q16881	649 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	LRRFIP1	Q32MZ4	808 aa	Known RBP	5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	TSGA10IP	Q3SY00	556 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	LCE2A	Q5TA79	106 aa	Predicted RBP	5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	CREB3L3	Q68CJ9	461 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	CCDC102B	Q68D86	513 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	PRPF40B	Q6NWY9	871 aa	Known RBP	5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	ZNF589	Q86UQ0	364 aa	Predicted RBP	5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	NBPF5P	Q86XG9	351 aa	Predicted RBP	5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	ANKRD18A	Q8IVF6	992 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	EFCAB3	Q8N7B9	438 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	TTC14	Q96N46	770 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	NLRP3	Q96P20	1036 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	SEC62	Q99442	399 aa	Known RBP	5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	BSDC1	Q9NW68	430 aa	Predicted RBP	5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	BRWD3	Q6RI45	1802 aa		5.39	□□□□□ -1.55
ATP2C1-223	ENST00000515854	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	SLC27A2	O14975	620 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	PPP1R37	O75864	691 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	PHF14	O94880	888 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	CHGB	P05060	677 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	CYP2E1	P05181	493 aa	Predicted RBP	5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	GYS1	P13807	737 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	ZKSCAN1	P17029	563 aa	Predicted RBP	5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	RXRB	P28702	533 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	GTF2E1	P29083	439 aa	Predicted RBP	5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	TM4SF1	P30408	202 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	MCAM	P43121	646 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	PHKA1	P46020	1223 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	FKBP4	Q02790	459 aa	Known RBP eCLIP	5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	CHRND	Q07001	517 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	UBE4A	Q14139	1066 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	NFIX	Q14938	502 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	TTF1	Q15361	905 aa	Predicted RBP	5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	RNF20	Q5VTR2	975 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	ILDR1	Q86SU0	546 aa	Predicted RBP	5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	HELB	Q8NG08	1087 aa	Predicted RBP	5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	TMX3	Q96JJ7	454 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	DSCC1	Q9BVC3	393 aa		5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	UPF3B	Q9BZI7	483 aa	Known RBP	5.38	□□□□□ -1.55
ATP2C1-223	ENST00000515854	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	5.38	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms