RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CTNNA3Q9UI47 895 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 OVOS2A0A0G2JMS6 1433 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 PRC1O43663 620 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 FGAP02671 866 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 RBM6P78332 1123 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 XPO4Q9C0E2 1151 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 KIAA1468Q9P260 1216 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 RXRAP19793 462 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 SCARF1Q14162 830 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 SYNE3Q6ZMZ3 975 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 CCAR2Q8N163 923 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 AIFM3Q96NN9 605 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 RTEL1Q9NZ71 1219 aa10.78□□□□□ -0.68
LIMCH1-215ENST00000512632 SPTLC2O15270 562 aa10.77□□□□□ -0.68
LIMCH1-215ENST00000512632 NEMFO60524 1076 aa10.77□□□□□ -0.68
LIMCH1-215ENST00000512632 LMOD1P29536 600 aaPredicted RBP10.77□□□□□ -0.68
LIMCH1-215ENST00000512632 DENND2AQ9ULE3 1009 aa10.77□□□□□ -0.68
LIMCH1-215ENST00000512632 SALL1Q9NSC2 1324 aa10.77□□□□□ -0.68
LIMCH1-215ENST00000512632 SLC3A2P08195 630 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-215ENST00000512632 PTPN21Q16825 1174 aa10.77□□□□□ -0.69
LIMCH1-215ENST00000512632 NBPF11Q86T75 865 aa10.77□□□□□ -0.69
LIMCH1-215ENST00000512632 TTC39AQ5SRH9 613 aa10.77□□□□□ -0.69
LIMCH1-215ENST00000512632 TRHP20396 242 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-215ENST00000512632 IMMTQ16891 758 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-215ENST00000512632 FBXO18Q8NFZ0 1043 aa10.77□□□□□ -0.69
LIMCH1-215ENST00000512632 MEGF6O75095 1541 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 ZNF202O95125 648 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 MYSM1Q5VVJ2 828 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 NYAP1Q6ZVC0 841 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 RALYLQ86SE5 291 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 FEZ1Q99689 392 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 ZAP70P43403 619 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 ELF2Q15723 593 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 CCDC158Q5M9N0 1113 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 ATL3Q6DD88 541 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 KIF18AQ8NI77 898 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 PUS7LQ9H0K6 701 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 OGFRQ9NZT2 677 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 RFX7Q2KHR2 1363 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 PALLDQ8WX93 1383 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 KIF28PB7ZC32 967 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 CCDC57Q2TAC2 916 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 TAF7LQ5H9L4 462 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 UTP14CQ5TAP6 766 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 CGNQ9P2M7 1197 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 XAGE2Q96GT9 111 aa10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 GTPBP4Q9BZE4 634 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-215ENST00000512632 FOXP2O15409 715 aa10.75□□□□□ -0.69
LIMCH1-215ENST00000512632 APPP05067 770 aa10.75□□□□□ -0.69
LIMCH1-215ENST00000512632 ATP1A3P13637 1013 aa10.75□□□□□ -0.69
LIMCH1-215ENST00000512632 KMT5BQ4FZB7 885 aa10.75□□□□□ -0.69
LIMCH1-215ENST00000512632 SYT10Q6XYQ8 523 aa10.75□□□□□ -0.69
LIMCH1-215ENST00000512632 FAM89AQ96GI7 184 aa10.75□□□□□ -0.69
LIMCH1-215ENST00000512632 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.75□□□□□ -0.69
LIMCH1-215ENST00000512632 E4F1Q66K89 784 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-215ENST00000512632 KCNG4Q8TDN1 519 aa10.75□□□□□ -0.69
LIMCH1-215ENST00000512632 HPS5Q9UPZ3 1129 aa10.75□□□□□ -0.69
LIMCH1-215ENST00000512632 CHD2O14647 1828 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-215ENST00000512632 ZNF213O14771 459 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 SFPQP23246 707 aaKnown RBP eCLIP10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 ANTXR2P58335 489 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 HSP90AA4PQ58FG1 418 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 ARMCX5Q6P1M9 558 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 ZNF771Q7L3S4 317 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 GPR108Q9NPR9 543 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 MRC1P22897 1456 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 A0A1W2PQ27 194 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 A0A1W2PQ64 194 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 A0A1W2PQD8 194 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 WDHD1O75717 1129 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 ANO1Q5XXA6 986 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 STK11IPQ8N1F8 1099 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 SYNE4Q8N205 404 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 NKX2-3Q8TAU0 364 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 DDX41Q9UJV9 622 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 DHX16O60231 1041 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 PFKFB1P16118 471 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 GSDMDP57764 484 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 SYCP1Q15431 976 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 HOMER1Q86YM7 354 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 NCOA7Q8NI08 942 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 PHKBQ93100 1093 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 USP54Q70EL1 1684 aa10.74□□□□□ -0.69
LIMCH1-215ENST00000512632 GOLGA8FQ08AF8 430 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 GOLGA8DPQ0D2H9 430 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 GNL2Q13823 731 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 FBXO38Q6PIJ6 1188 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 GPAA1O43292 621 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 SLU7O95391 586 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 YEATS4O95619 227 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 ERCC6LQ2NKX8 1250 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 CCDC191Q8NCU4 936 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 LRRN4CLQ8ND94 238 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 C19orf44Q9H6X5 657 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 KIF23Q02241 960 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 AXDND1Q5T1B0 1012 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 MB21D2Q8IYB1 491 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 OSBPL5Q9H0X9 879 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 POLR3EQ9NVU0 708 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 FANCCQ00597 558 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms