RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 DDX3YO15523 660 aaKnown RBP6.28□□□□□ -1.4
SCN1A-205ENST00000473295 ICMTO60725 284 aa6.28□□□□□ -1.4
SCN1A-205ENST00000473295 TRPA1O75762 1119 aa6.28□□□□□ -1.4
SCN1A-205ENST00000473295 NLRP12P59046 1061 aa6.28□□□□□ -1.4
SCN1A-205ENST00000473295 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-205ENST00000473295 CLEC10AQ8IUN9 316 aa6.28□□□□□ -1.4
SCN1A-205ENST00000473295 GLYCTKQ8IVS8 523 aa6.28□□□□□ -1.4
SCN1A-205ENST00000473295 ZFYVE28Q9HCC9 887 aa6.28□□□□□ -1.4
SCN1A-205ENST00000473295 PCMTD2Q9NV79 361 aa6.28□□□□□ -1.4
SCN1A-205ENST00000473295 CCDC87Q9NVE4 849 aa6.28□□□□□ -1.4
SCN1A-205ENST00000473295 BRPF3Q9ULD4 1205 aa6.28□□□□□ -1.4
SCN1A-205ENST00000473295 NFIAQ12857 509 aa6.27□□□□□ -1.41
SCN1A-205ENST00000473295 PDE3BQ13370 1112 aa6.27□□□□□ -1.41
SCN1A-205ENST00000473295 ASAP3Q8TDY4 903 aa6.27□□□□□ -1.41
SCN1A-205ENST00000473295 HHIPQ96QV1 700 aa6.27□□□□□ -1.41
SCN1A-205ENST00000473295 DBNDD2Q9BQY9 259 aa6.27□□□□□ -1.41
SCN1A-205ENST00000473295 CYP4F12Q9HCS2 524 aa6.27□□□□□ -1.41
SCN1A-205ENST00000473295 ANO2Q9NQ90 1003 aa6.27□□□□□ -1.41
SCN1A-205ENST00000473295 CARNS1A5YM72 827 aa6.26□□□□□ -1.41
SCN1A-205ENST00000473295 H3BRB1 525 aa6.26□□□□□ -1.41
SCN1A-205ENST00000473295 SOX1O00570 391 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-205ENST00000473295 NDUFB5O43674 189 aa6.26□□□□□ -1.41
SCN1A-205ENST00000473295 GAS2O43903 313 aaKnown RBP6.26□□□□□ -1.41
SCN1A-205ENST00000473295 COBLO75128 1261 aa6.26□□□□□ -1.41
SCN1A-205ENST00000473295 GRIK1P39086 918 aa6.26□□□□□ -1.41
SCN1A-205ENST00000473295 HP1BP3Q5SSJ5 553 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-205ENST00000473295 NUTM2GQ5VZR2 741 aa6.26□□□□□ -1.41
SCN1A-205ENST00000473295 RNF43Q68DV7 783 aa6.26□□□□□ -1.41
SCN1A-205ENST00000473295 VN1R5Q7Z5H4 357 aa6.26□□□□□ -1.41
SCN1A-205ENST00000473295 FAM20CQ8IXL6 584 aa6.26□□□□□ -1.41
SCN1A-205ENST00000473295 CITED4Q96RK1 184 aa6.26□□□□□ -1.41
SCN1A-205ENST00000473295 FAM83CQ9BQN1 747 aa6.26□□□□□ -1.41
SCN1A-205ENST00000473295 TUT1Q9H6E5 874 aaKnown RBP6.26□□□□□ -1.41
SCN1A-205ENST00000473295 C7orf69Q9H7B7 122 aa6.26□□□□□ -1.41
SCN1A-205ENST00000473295 ESRRAP11474 423 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-205ENST00000473295 BMP3P12645 472 aa6.25□□□□□ -1.41
SCN1A-205ENST00000473295 PREPP48147 710 aa6.25□□□□□ -1.41
SCN1A-205ENST00000473295 PEAR1Q5VY43 1037 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-205ENST00000473295 INTS5Q6P9B9 1019 aaKnown RBP6.25□□□□□ -1.41
SCN1A-205ENST00000473295 GALNT12Q8IXK2 581 aa6.25□□□□□ -1.41
SCN1A-205ENST00000473295 KCNF1Q9H3M0 494 aa6.25□□□□□ -1.41
SCN1A-205ENST00000473295 SUGCTQ9HAC7 445 aa6.25□□□□□ -1.41
SCN1A-205ENST00000473295 ZFYVE1Q9HBF4 777 aa6.25□□□□□ -1.41
SCN1A-205ENST00000473295 CD97P48960 835 aa6.24□□□□□ -1.41
SCN1A-205ENST00000473295 EXOSC6Q5RKV6 272 aaKnown RBP6.24□□□□□ -1.41
SCN1A-205ENST00000473295 BEND4Q6ZU67 534 aa6.24□□□□□ -1.41
SCN1A-205ENST00000473295 TRIM42Q8IWZ5 723 aa6.24□□□□□ -1.41
SCN1A-205ENST00000473295 SMG8Q8ND04 991 aaKnown RBP6.24□□□□□ -1.41
SCN1A-205ENST00000473295 GIMAP7Q8NHV1 300 aa6.24□□□□□ -1.41
SCN1A-205ENST00000473295 DDX54Q8TDD1 881 aaKnown RBP6.24□□□□□ -1.41
SCN1A-205ENST00000473295 PSMG3-AS1Q96PY0 264 aa6.24□□□□□ -1.41
SCN1A-205ENST00000473295 USP26Q9BXU7 913 aa6.24□□□□□ -1.41
SCN1A-205ENST00000473295 TMPRSS13Q9BYE2 586 aa6.24□□□□□ -1.41
SCN1A-205ENST00000473295 LOC100289279A0A1B0GTE1 492 aa6.23□□□□□ -1.41
SCN1A-205ENST00000473295 SSTR4P31391 388 aa6.23□□□□□ -1.41
SCN1A-205ENST00000473295 ZDHHC13Q8IUH4 622 aa6.23□□□□□ -1.41
SCN1A-205ENST00000473295 CLEC4MQ9H2X3 399 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-205ENST00000473295 LIN7BQ9HAP6 207 aa6.23□□□□□ -1.41
SCN1A-205ENST00000473295 A0A096LPE4 126 aa6.22□□□□□ -1.41
SCN1A-205ENST00000473295 A0A1W2PPZ6 126 aa6.22□□□□□ -1.41
SCN1A-205ENST00000473295 HMX2A2RU54 273 aa6.22□□□□□ -1.41
SCN1A-205ENST00000473295 KIAA1324LA8MWY0 1029 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-205ENST00000473295 CPNE3O75131 537 aaKnown RBP6.22□□□□□ -1.41
SCN1A-205ENST00000473295 TGFB1P01137 390 aa6.22□□□□□ -1.41
SCN1A-205ENST00000473295 SERPINB4P48594 390 aa6.22□□□□□ -1.41
SCN1A-205ENST00000473295 GSTM4Q03013 218 aa6.22□□□□□ -1.41
SCN1A-205ENST00000473295 CCNJLQ8IV13 435 aa6.22□□□□□ -1.41
SCN1A-205ENST00000473295 C12orf50Q8NA57 414 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-205ENST00000473295 CCER1Q8TC90 406 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-205ENST00000473295 YIPF2Q9BWQ6 316 aa6.22□□□□□ -1.41
SCN1A-205ENST00000473295 LATS2Q9NRM7 1088 aa6.22□□□□□ -1.41
SCN1A-205ENST00000473295 A0A1W2PP55 124 aa6.21□□□□□ -1.42
SCN1A-205ENST00000473295 TIAF1O95411 115 aa6.21□□□□□ -1.42
SCN1A-205ENST00000473295 CYP11A1P05108 521 aa6.21□□□□□ -1.42
SCN1A-205ENST00000473295 MAP4P27816 1152 aaKnown RBP6.21□□□□□ -1.42
SCN1A-205ENST00000473295 PCDH1Q08174 1060 aa6.21□□□□□ -1.42
SCN1A-205ENST00000473295 CPSF6Q16630 551 aaKnown RBP eCLIP6.21□□□□□ -1.42
SCN1A-205ENST00000473295 KIAA0319Q5VV43 1072 aa6.21□□□□□ -1.42
SCN1A-205ENST00000473295 HGSNATQ68CP4 663 aa6.21□□□□□ -1.42
SCN1A-205ENST00000473295 FAM129BQ96TA1 746 aa6.21□□□□□ -1.42
SCN1A-205ENST00000473295 KRTAP4-8Q9BYQ9 185 aa6.21□□□□□ -1.42
SCN1A-205ENST00000473295 DNAJC25Q9H1X3 360 aa6.21□□□□□ -1.42
SCN1A-205ENST00000473295 POLR3DP05423 398 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-205ENST00000473295 RXRBP28702 533 aa6.2□□□□□ -1.42
SCN1A-205ENST00000473295 ARHGAP4P98171 946 aa6.2□□□□□ -1.42
SCN1A-205ENST00000473295 TXNDC2Q86VQ3 553 aa6.2□□□□□ -1.42
SCN1A-205ENST00000473295 METTL12A8MUP2 240 aa6.19□□□□□ -1.42
SCN1A-205ENST00000473295 USP11P51784 963 aa6.19□□□□□ -1.42
SCN1A-205ENST00000473295 HNRNPUQ00839 825 aaKnown RBP eCLIP6.19□□□□□ -1.42
SCN1A-205ENST00000473295 PTPN12Q05209 780 aaKnown RBP6.19□□□□□ -1.42
SCN1A-205ENST00000473295 ECM1Q16610 540 aa6.19□□□□□ -1.42
SCN1A-205ENST00000473295 PAOXQ6QHF9 649 aa6.19□□□□□ -1.42
SCN1A-205ENST00000473295 SHKBP1Q8TBC3 707 aa6.19□□□□□ -1.42
SCN1A-205ENST00000473295 DMRTB1Q96MA1 342 aa6.19□□□□□ -1.42
SCN1A-205ENST00000473295 TCF12Q99081 682 aa6.19□□□□□ -1.42
SCN1A-205ENST00000473295 EHD4Q9H223 541 aa6.19□□□□□ -1.42
SCN1A-205ENST00000473295 ATG3Q9NT62 314 aa6.19□□□□□ -1.42
SCN1A-205ENST00000473295 GRIA4P48058 902 aa6.18□□□□□ -1.42
SCN1A-205ENST00000473295 SOX4Q06945 474 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-205ENST00000473295 POU4F3Q15319 338 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms