RNA–Protein interactions for RNA: ENST00000473214.1

RTF1-203, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene RTF1, Length 475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-203ENST00000473214 LMTK3Q96Q04 1460 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 BNIP3LO60238 219 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 PRPF40AO75400 957 aaKnown RBP7.56□□□□□ -1.2
RTF1-203ENST00000473214 FOSP01100 380 aaPredicted RBP7.56□□□□□ -1.2
RTF1-203ENST00000473214 FGRP09769 529 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 BMP4P12644 408 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 GTF2E1P29083 439 aaPredicted RBP7.56□□□□□ -1.2
RTF1-203ENST00000473214 PDE6BP35913 854 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 FAM193AP78312 1265 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 FKBP4Q02790 459 aaKnown RBP eCLIP7.56□□□□□ -1.2
RTF1-203ENST00000473214 BRD3Q15059 726 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 ESCO1Q5FWF5 840 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 EFHC2Q5JST6 749 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 PPP4R4Q6NUP7 873 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 PAF1Q8N7H5 531 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 TSR2Q969E8 191 aaKnown RBP7.56□□□□□ -1.2
RTF1-203ENST00000473214 ABHD17AQ96GS6 310 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 TMX1Q9H3N1 280 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 RNF19AQ9NV58 838 aa7.56□□□□□ -1.2
RTF1-203ENST00000473214 CXXC1Q9P0U4 656 aaPredicted RBP7.56□□□□□ -1.2
RTF1-203ENST00000473214 TPX2Q9ULW0 747 aaKnown RBP7.56□□□□□ -1.2
RTF1-203ENST00000473214 TNFRSF10BO14763 440 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 GNB5O14775 395 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 KIF3BO15066 747 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 NRDCO43847 1150 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 CDC45O75419 566 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 FGFR3P22607 806 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 AMPD1P23109 780 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 MAN1A1P33908 653 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 MAPK8P45983 427 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 DAB2P98082 770 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 CTBSQ01459 385 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 MTMR3Q13615 1198 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 ZNF394Q53GI3 561 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 PPM1EQ8WY54 764 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 PRIMPOLQ96LW4 560 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 CEP63Q96MT8 703 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 CRISPLD1Q9H336 500 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 HOMER2Q9NSB8 354 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 GGA1Q9UJY5 639 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 NAP1L2Q9ULW6 460 aaPredicted RBP7.55□□□□□ -1.2
RTF1-203ENST00000473214 PCDHGB7Q9Y5F8 929 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 SCINQ9Y6U3 715 aa7.55□□□□□ -1.2
RTF1-203ENST00000473214 ABCA10Q8WWZ4 1543 aa7.54□□□□□ -1.2
RTF1-203ENST00000473214 IFRD1O00458 451 aaPredicted RBP7.54□□□□□ -1.2
RTF1-203ENST00000473214 PIK3R2O00459 728 aa7.54□□□□□ -1.2
RTF1-203ENST00000473214 CAND2O75155 1236 aa7.54□□□□□ -1.2
RTF1-203ENST00000473214 KRT18P05783 430 aaKnown RBP7.54□□□□□ -1.2
RTF1-203ENST00000473214 CHRNA4P43681 627 aa7.54□□□□□ -1.2
RTF1-203ENST00000473214 CHMP4BP1P59074 171 aa7.54□□□□□ -1.2
RTF1-203ENST00000473214 POU5F1Q01860 360 aaKnown RBP7.54□□□□□ -1.2
RTF1-203ENST00000473214 FMR1Q06787 632 aaKnown RBP eCLIP7.54□□□□□ -1.2
RTF1-203ENST00000473214 SF3B2Q13435 895 aaKnown RBP7.54□□□□□ -1.2
RTF1-203ENST00000473214 SYCP2LQ5T4T6 812 aa7.54□□□□□ -1.2
RTF1-203ENST00000473214 TTC39BQ5VTQ0 682 aaPredicted RBP7.54□□□□□ -1.2
RTF1-203ENST00000473214 RAVER1Q8IY67 606 aaKnown RBP7.54□□□□□ -1.2
RTF1-203ENST00000473214 RHBDD1Q8TEB9 315 aa7.54□□□□□ -1.2
RTF1-203ENST00000473214 ZNF594Q96JF6 807 aaPredicted RBP7.54□□□□□ -1.2
RTF1-203ENST00000473214 BTBD6Q96KE9 485 aa7.54□□□□□ -1.2
RTF1-203ENST00000473214 SRPK1Q96SB4 655 aaKnown RBP7.54□□□□□ -1.2
RTF1-203ENST00000473214 APBA2Q99767 749 aa7.54□□□□□ -1.2
RTF1-203ENST00000473214 ZHX3Q9H4I2 956 aa7.54□□□□□ -1.2
RTF1-203ENST00000473214 DDX41Q9UJV9 622 aaKnown RBP7.54□□□□□ -1.2
RTF1-203ENST00000473214 NPHP1O15259 732 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 ZRANB2O95218 330 aaKnown RBP eCLIP7.53□□□□□ -1.2
RTF1-203ENST00000473214 FGAP02671 866 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 EPXP11678 715 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 SERINC3Q13530 473 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 NCOA4Q13772 614 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 TSGA10IPQ3SY00 556 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 L1TD1Q5T7N2 865 aaKnown RBP7.53□□□□□ -1.2
RTF1-203ENST00000473214 ICE2Q659A1 982 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.53□□□□□ -1.2
RTF1-203ENST00000473214 PHTF2Q8N3S3 785 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 C1orf131Q8NDD1 294 aaKnown RBP7.53□□□□□ -1.2
RTF1-203ENST00000473214 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.53□□□□□ -1.2
RTF1-203ENST00000473214 MKL1Q969V6 931 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 ARPC5LQ9BPX5 153 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 SEMA6BQ9H3T3 888 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 ETNK1Q9HBU6 452 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 SEPT3Q9UH03 358 aa7.53□□□□□ -1.2
RTF1-203ENST00000473214 TREHO43280 583 aa7.52□□□□□ -1.21
RTF1-203ENST00000473214 ARAFP10398 606 aa7.52□□□□□ -1.21
RTF1-203ENST00000473214 DGKGP49619 791 aa7.52□□□□□ -1.21
RTF1-203ENST00000473214 RACK1P63244 317 aaKnown RBP7.52□□□□□ -1.21
RTF1-203ENST00000473214 DOC2BQ14184 412 aa7.52□□□□□ -1.21
RTF1-203ENST00000473214 PPP2R5AQ15172 486 aa7.52□□□□□ -1.21
RTF1-203ENST00000473214 VPS72Q15906 364 aa7.52□□□□□ -1.21
RTF1-203ENST00000473214 NBPF6Q5VWK0 638 aa7.52□□□□□ -1.21
RTF1-203ENST00000473214 KRTAP1-3Q8IUG1 177 aa7.52□□□□□ -1.21
RTF1-203ENST00000473214 SAMD3Q8N6K7 520 aa7.52□□□□□ -1.21
RTF1-203ENST00000473214 NBPF4Q96M43 638 aa7.52□□□□□ -1.21
RTF1-203ENST00000473214 RBCK1Q9BYM8 510 aa7.52□□□□□ -1.21
RTF1-203ENST00000473214 DNAAF2Q9NVR5 837 aaKnown RBP7.52□□□□□ -1.21
RTF1-203ENST00000473214 FANCLQ9NW38 375 aa7.52□□□□□ -1.21
RTF1-203ENST00000473214 STAU1O95793 577 aaKnown RBP7.51□□□□□ -1.21
RTF1-203ENST00000473214 USP4Q13107 963 aa7.51□□□□□ -1.21
RTF1-203ENST00000473214 OCLNQ16625 522 aa7.51□□□□□ -1.21
RTF1-203ENST00000473214 EFCAB2Q5VUJ9 269 aa7.51□□□□□ -1.21
RTF1-203ENST00000473214 ZKSCAN2Q63HK3 967 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms