RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ADAMTS8Q9UP79 889 aa7.55□□□□□ -1.2
HMGB1-207ENST00000468384 TRAK1Q9UPV9 953 aa7.55□□□□□ -1.2
HMGB1-207ENST00000468384 NFAT5O94916 1531 aa7.55□□□□□ -1.2
HMGB1-207ENST00000468384 COL2A1P02458 1487 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-207ENST00000468384 RNF225M0QZC1 329 aaPredicted RBP7.54□□□□□ -1.2
HMGB1-207ENST00000468384 LURAP1LQ8IV03 231 aa7.54□□□□□ -1.2
HMGB1-207ENST00000468384 ASAP1Q9ULH1 1129 aa7.54□□□□□ -1.2
HMGB1-207ENST00000468384 NRXN2Q9P2S2 1712 aa7.53□□□□□ -1.2
HMGB1-207ENST00000468384 RIF1Q5UIP0 2472 aaKnown RBP7.53□□□□□ -1.2
HMGB1-207ENST00000468384 AFDNP55196 1824 aaKnown RBP7.53□□□□□ -1.2
HMGB1-207ENST00000468384 SLX4Q8IY92 1834 aa7.53□□□□□ -1.2
HMGB1-207ENST00000468384 PRR33A8MZF0 331 aa7.53□□□□□ -1.2
HMGB1-207ENST00000468384 SMPD1P17405 629 aa7.53□□□□□ -1.2
HMGB1-207ENST00000468384 PDE6BP35913 854 aa7.53□□□□□ -1.2
HMGB1-207ENST00000468384 GJA8P48165 433 aa7.53□□□□□ -1.2
HMGB1-207ENST00000468384 SREBF2Q12772 1141 aa7.53□□□□□ -1.2
HMGB1-207ENST00000468384 BLOC1S3Q6QNY0 202 aa7.53□□□□□ -1.2
HMGB1-207ENST00000468384 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.53□□□□□ -1.2
HMGB1-207ENST00000468384 PACS2Q86VP3 889 aa7.53□□□□□ -1.2
HMGB1-207ENST00000468384 TTYH1Q9H313 450 aaPredicted RBP7.53□□□□□ -1.2
HMGB1-207ENST00000468384 ZFYVE26Q68DK2 2539 aa7.52□□□□□ -1.21
HMGB1-207ENST00000468384 MED19A0JLT2 244 aaPredicted RBP7.52□□□□□ -1.21
HMGB1-207ENST00000468384 ALDH1A1P00352 501 aa7.52□□□□□ -1.21
HMGB1-207ENST00000468384 SYN1P17600 705 aa7.52□□□□□ -1.21
HMGB1-207ENST00000468384 MTFR1Q15390 333 aa7.52□□□□□ -1.21
HMGB1-207ENST00000468384 RGL3Q3MIN7 710 aa7.52□□□□□ -1.21
HMGB1-207ENST00000468384 KRT26Q7Z3Y9 468 aa7.52□□□□□ -1.21
HMGB1-207ENST00000468384 C7orf61Q8IZ16 206 aa7.52□□□□□ -1.21
HMGB1-207ENST00000468384 TRPM4Q8TD43 1214 aa7.52□□□□□ -1.21
HMGB1-207ENST00000468384 KRTAP4-2Q9BYR5 136 aa7.52□□□□□ -1.21
HMGB1-207ENST00000468384 WDR70Q9NW82 654 aa7.52□□□□□ -1.21
HMGB1-207ENST00000468384 ADGRB1O14514 1584 aa7.51□□□□□ -1.21
HMGB1-207ENST00000468384 BMP1P13497 986 aa7.51□□□□□ -1.21
HMGB1-207ENST00000468384 STYK1Q6J9G0 422 aa7.51□□□□□ -1.21
HMGB1-207ENST00000468384 SLC4A9Q96Q91 983 aa7.51□□□□□ -1.21
HMGB1-207ENST00000468384 UIMC1Q96RL1 719 aa7.51□□□□□ -1.21
HMGB1-207ENST00000468384 BRIP1Q9BX63 1249 aa7.51□□□□□ -1.21
HMGB1-207ENST00000468384 CACNA1SQ13698 1873 aa7.51□□□□□ -1.21
HMGB1-207ENST00000468384 REV3LO60673 3130 aa7.5□□□□□ -1.21
HMGB1-207ENST00000468384 TTC24A2A3L6 582 aaPredicted RBP7.5□□□□□ -1.21
HMGB1-207ENST00000468384 ADM5C9JUS6 153 aa7.5□□□□□ -1.21
HMGB1-207ENST00000468384 GJB1P08034 283 aa7.5□□□□□ -1.21
HMGB1-207ENST00000468384 ID4P47928 161 aa7.5□□□□□ -1.21
HMGB1-207ENST00000468384 USPL1Q5W0Q7 1092 aa7.5□□□□□ -1.21
HMGB1-207ENST00000468384 ERICH6Q7L0X2 663 aa7.5□□□□□ -1.21
HMGB1-207ENST00000468384 RTKN2Q8IZC4 609 aa7.5□□□□□ -1.21
HMGB1-207ENST00000468384 BPTFQ12830 3046 aa7.5□□□□□ -1.21
HMGB1-207ENST00000468384 MAP3K19Q56UN5 1328 aa7.5□□□□□ -1.21
HMGB1-207ENST00000468384 LAMB2P55268 1798 aa7.49□□□□□ -1.21
HMGB1-207ENST00000468384 COL4A5P29400 1685 aa7.49□□□□□ -1.21
HMGB1-207ENST00000468384 PPP1R15BQ5SWA1 713 aa7.49□□□□□ -1.21
HMGB1-207ENST00000468384 OLFM4Q6UX06 510 aa7.49□□□□□ -1.21
HMGB1-207ENST00000468384 PPM1EQ8WY54 764 aa7.49□□□□□ -1.21
HMGB1-207ENST00000468384 PTPN13Q12923 2485 aa7.49□□□□□ -1.21
HMGB1-207ENST00000468384 LTN1O94822 1766 aa7.48□□□□□ -1.21
HMGB1-207ENST00000468384 KDRP35968 1356 aa7.48□□□□□ -1.21
HMGB1-207ENST00000468384 TCF20Q9UGU0 1960 aaKnown RBP7.48□□□□□ -1.21
HMGB1-207ENST00000468384 PI4K2BG5E9Z4 385 aa7.48□□□□□ -1.21
HMGB1-207ENST00000468384 COL11A2P13942 1736 aaPredicted RBP7.48□□□□□ -1.21
HMGB1-207ENST00000468384 GMPSP49915 693 aaPredicted RBP7.48□□□□□ -1.21
HMGB1-207ENST00000468384 SP3Q02447 781 aa7.48□□□□□ -1.21
HMGB1-207ENST00000468384 ST3GAL2Q16842 350 aa7.48□□□□□ -1.21
HMGB1-207ENST00000468384 KANK4Q5T7N3 995 aaPredicted RBP7.48□□□□□ -1.21
HMGB1-207ENST00000468384 LTV1Q96GA3 475 aaPredicted RBP7.48□□□□□ -1.21
HMGB1-207ENST00000468384 ATG3Q9NT62 314 aa7.48□□□□□ -1.21
HMGB1-207ENST00000468384 FAM198AQ9UFP1 575 aa7.48□□□□□ -1.21
HMGB1-207ENST00000468384 CD163L1Q9NR16 1453 aa7.48□□□□□ -1.21
HMGB1-207ENST00000468384 ITGB4P16144 1822 aa7.48□□□□□ -1.21
HMGB1-207ENST00000468384 KDM3BQ7LBC6 1761 aa7.47□□□□□ -1.21
HMGB1-207ENST00000468384 ZNF462Q96JM2 2506 aa7.47□□□□□ -1.21
HMGB1-207ENST00000468384 CGNL1Q0VF96 1302 aa7.47□□□□□ -1.21
HMGB1-207ENST00000468384 PCDH11XQ9BZA7 1347 aa7.47□□□□□ -1.21
HMGB1-207ENST00000468384 PCDH11YQ9BZA8 1340 aa7.47□□□□□ -1.21
HMGB1-207ENST00000468384 XIRP2A4UGR9 3374 aa7.46□□□□□ -1.21
HMGB1-207ENST00000468384 CYP27B1O15528 508 aa7.46□□□□□ -1.22
HMGB1-207ENST00000468384 SRGNP10124 158 aa7.46□□□□□ -1.22
HMGB1-207ENST00000468384 FKBP1BP68106 108 aa7.46□□□□□ -1.22
HMGB1-207ENST00000468384 ARHGEF6Q15052 776 aa7.46□□□□□ -1.22
HMGB1-207ENST00000468384 MASTLQ96GX5 879 aa7.46□□□□□ -1.22
HMGB1-207ENST00000468384 KRTAP4-9Q9BYQ8 210 aa7.46□□□□□ -1.22
HMGB1-207ENST00000468384 PCDHB3Q9Y5E6 796 aa7.46□□□□□ -1.22
HMGB1-207ENST00000468384 FAM208AQ9UK61 1670 aaKnown RBP7.46□□□□□ -1.22
HMGB1-207ENST00000468384 FAM186AA6NE01 2351 aa7.46□□□□□ -1.22
HMGB1-207ENST00000468384 GVINP1Q7Z2Y8 2422 aa7.46□□□□□ -1.22
HMGB1-207ENST00000468384 COL15A1P39059 1388 aa7.46□□□□□ -1.22
HMGB1-207ENST00000468384 ANKRD31Q8N7Z5 1873 aa7.45□□□□□ -1.22
HMGB1-207ENST00000468384 WDR87Q6ZQQ6 2873 aa7.45□□□□□ -1.22
HMGB1-207ENST00000468384 ANKRD26Q9UPS8 1709 aa7.45□□□□□ -1.22
HMGB1-207ENST00000468384 CCL5P13501 91 aa7.45□□□□□ -1.22
HMGB1-207ENST00000468384 U2AF1L4Q8WU68 220 aaKnown RBP7.45□□□□□ -1.22
HMGB1-207ENST00000468384 HPS1Q92902 700 aa7.45□□□□□ -1.22
HMGB1-207ENST00000468384 TMOD3Q9NYL9 352 aa7.45□□□□□ -1.22
HMGB1-207ENST00000468384 MYH14Q7Z406 1995 aaKnown RBP7.45□□□□□ -1.22
HMGB1-207ENST00000468384 RAB3GAP2Q9H2M9 1393 aa7.45□□□□□ -1.22
HMGB1-207ENST00000468384 TEP1Q99973 2627 aaKnown RBP7.44□□□□□ -1.22
HMGB1-207ENST00000468384 ZNF646O15015 1829 aaPredicted RBP7.44□□□□□ -1.22
HMGB1-207ENST00000468384 J3QL48 77 aa7.44□□□□□ -1.22
HMGB1-207ENST00000468384 CRKLP46109 303 aaKnown RBP7.44□□□□□ -1.22
HMGB1-207ENST00000468384 MAP3K9P80192 1104 aa7.44□□□□□ -1.22
HMGB1-207ENST00000468384 MOB2Q70IA6 237 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms