RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 IFT20Q8IY31 132 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 ZNF622Q969S3 477 aaKnown RBP eCLIP10.01□□□□□ -0.818e-7■■□□□ 13.7
NIPBL-202ENST00000448238 PHF23Q9BUL5 403 aaPredicted RBP10.01□□□□□ -0.81
NIPBL-202ENST00000448238 DNAI1Q9UI46 699 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 PFDN6O15212 129 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 EEF1DP29692 281 aaKnown RBP10.01□□□□□ -0.81
NIPBL-202ENST00000448238 UBE3BQ7Z3V4 1068 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 ZCRB1Q8TBF4 217 aaKnown RBP10.01□□□□□ -0.81
NIPBL-202ENST00000448238 NSMCE1Q8WV22 266 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 ZSCAN32Q9NX65 697 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 POLR3DP05423 398 aaPredicted RBP10.01□□□□□ -0.81
NIPBL-202ENST00000448238 HNRNPMP52272 730 aaKnown RBP eCLIP10.01□□□□□ -0.813e-8■■■□□ 15.6
NIPBL-202ENST00000448238 CCDC122Q5T0U0 273 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 HHATQ5VTY9 493 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 NECAB1Q8N987 351 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.01□□□□□ -0.81
NIPBL-202ENST00000448238 SMIM23A6NLE4 172 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 UBL4BQ8N7F7 174 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 PNISRQ8TF01 805 aaKnown RBP10.01□□□□□ -0.81
NIPBL-202ENST00000448238 PPANQ9NQ55 473 aaKnown RBP10.01□□□□□ -0.81
NIPBL-202ENST00000448238 FRMD4BQ9Y2L6 1034 aa10.01□□□□□ -0.81
NIPBL-202ENST00000448238 DHX29Q7Z478 1369 aaKnown RBP10.01□□□□□ -0.81
NIPBL-202ENST00000448238 ANGPT1Q15389 498 aa10□□□□□ -0.81
NIPBL-202ENST00000448238 P3H4Q92791 437 aa10□□□□□ -0.81
NIPBL-202ENST00000448238 GTPBP10A4D1E9 387 aaKnown RBP10□□□□□ -0.81
NIPBL-202ENST00000448238 RSBN1LQ6PCB5 846 aaPredicted RBP10□□□□□ -0.81
NIPBL-202ENST00000448238 IGHMBP2P38935 993 aaKnown RBP10□□□□□ -0.81
NIPBL-202ENST00000448238 CFAP70Q5T0N1 1121 aa10□□□□□ -0.81
NIPBL-202ENST00000448238 KHDRBS2Q5VWX1 349 aaKnown RBP10□□□□□ -0.81
NIPBL-202ENST00000448238 TRIM42Q8IWZ5 723 aa10□□□□□ -0.81
NIPBL-202ENST00000448238 TEX9Q8N6V9 391 aa10□□□□□ -0.81
NIPBL-202ENST00000448238 CTAGE3PQ8IX95 158 aa10□□□□□ -0.81
NIPBL-202ENST00000448238 TMX1Q9H3N1 280 aa10□□□□□ -0.81
NIPBL-202ENST00000448238 CDV3Q9UKY7 258 aaKnown RBP10□□□□□ -0.81
NIPBL-202ENST00000448238 MTMR3Q13615 1198 aa10□□□□□ -0.81
NIPBL-202ENST00000448238 KIF11P52732 1056 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 CAVIN4Q5BKX8 364 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 TMTC4Q5T4D3 741 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 SUFUQ9UMX1 484 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 STX10O60499 249 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 PPFIA4O75335 1185 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 GABPAQ06546 454 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 EFCAB2Q5VUJ9 269 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 PARP2Q9UGN5 583 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 ZBTB12Q9Y330 459 aaPredicted RBP9.99□□□□□ -0.81
NIPBL-202ENST00000448238 GOLGA8CPA6NN73 597 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 NEK11Q8NG66 645 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 HPDP32754 393 aaPredicted RBP9.99□□□□□ -0.81
NIPBL-202ENST00000448238 PEX19P40855 299 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 NUCB1Q02818 461 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 GABPB1Q06547 395 aaPredicted RBP9.99□□□□□ -0.81
NIPBL-202ENST00000448238 ZMYND8Q9ULU4 1186 aaPredicted RBP9.99□□□□□ -0.81
NIPBL-202ENST00000448238 FAM13AO94988 1023 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 PPP2R5DQ14738 602 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 CENPKQ9BS16 269 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 TRAK1Q9UPV9 953 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 RNF216Q9NWF9 866 aaPredicted RBP9.99□□□□□ -0.81
NIPBL-202ENST00000448238 BRD2P25440 801 aaKnown RBP9.99□□□□□ -0.81
NIPBL-202ENST00000448238 BLVRAP53004 296 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 GRIN1Q05586 938 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 GRAMD4Q6IC98 578 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 EP400NLQ6ZTU2 488 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 PANK1Q8TE04 598 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 LRGUKQ96M69 825 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 BAIAP2L1Q9UHR4 511 aa9.99□□□□□ -0.81
NIPBL-202ENST00000448238 TMED1Q13445 227 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 KMT5BQ4FZB7 885 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 VWA3BQ502W6 1294 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 PLEKHO1Q53GL0 409 aaPredicted RBP9.98□□□□□ -0.81
NIPBL-202ENST00000448238 TRIM68Q6AZZ1 485 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.98□□□□□ -0.81
NIPBL-202ENST00000448238 AACSQ86V21 672 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 ANLNQ9NQW6 1124 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 HS1BP3Q53T59 392 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 HS2ST1Q7LGA3 356 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 PRPF38AQ8NAV1 312 aaKnown RBP9.98□□□□□ -0.81
NIPBL-202ENST00000448238 SIRT1Q96EB6 747 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 KLHL14Q9P2G3 628 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 FBXO2Q9UK22 296 aaPredicted RBP9.98□□□□□ -0.81
NIPBL-202ENST00000448238 NUTM2FA1L443 756 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 XRCC6P12956 609 aaKnown RBP eCLIP9.98□□□□□ -0.81
NIPBL-202ENST00000448238 MYCNP04198 464 aaPredicted RBP9.98□□□□□ -0.81
NIPBL-202ENST00000448238 STAT6P42226 847 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 CKAP2LQ8IYA6 745 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 ZNF830Q96NB3 372 aaPredicted RBP9.98□□□□□ -0.81
NIPBL-202ENST00000448238 SLC38A10Q9HBR0 1119 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 PPP1R12AO14974 1030 aaPredicted RBP9.98□□□□□ -0.81
NIPBL-202ENST00000448238 DAPK3O43293 454 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 TEX12Q9BXU0 123 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 TMOD4Q9NZQ9 345 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 WBP4O75554 376 aaKnown RBP9.98□□□□□ -0.81
NIPBL-202ENST00000448238 PSMD7P51665 324 aa9.98□□□□□ -0.81
NIPBL-202ENST00000448238 PAIP2BQ9ULR5 123 aaKnown RBP9.98□□□□□ -0.81
NIPBL-202ENST00000448238 GLRX3O76003 335 aaKnown RBP9.97□□□□□ -0.81
NIPBL-202ENST00000448238 ZNF428Q96B54 188 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 HAUS1Q96CS2 278 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 YY1AP1Q9H869 796 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 KRT4P19013 534 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 PPP2R5EQ16537 467 aa9.97□□□□□ -0.81
NIPBL-202ENST00000448238 ZKSCAN8Q15776 578 aaPredicted RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 141.2 ms