RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 ZNF354CQ86Y25 554 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 SMAP1Q8IYB5 467 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 TRIM63Q969Q1 353 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 EHD4Q9H223 541 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 DAAM1Q9Y4D1 1078 aa2.92□□□□□ -1.94
CCDC88A-208ENST00000444458 STAT3P40763 770 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 PSEN2P49810 448 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 CCDC70Q6NSX1 233 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 DTHD1Q6ZMT9 781 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 PASD1Q8IV76 773 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 CMTR1Q8N1G2 835 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 STAG2Q8N3U4 1231 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 TEX19Q8NA77 164 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 VPS37AQ8NEZ2 397 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 E2F7Q96AV8 911 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 ZFRQ96KR1 1074 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 PRDM9Q9NQV7 894 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 TRAK1Q9UPV9 953 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 WASLO00401 505 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 TNFRSF21O75509 655 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 PF4P02776 101 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 NEK2P51955 445 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 GFOD2Q3B7J2 385 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 MSS51Q4VC12 460 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 ANKRD42Q8N9B4 389 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 STAC3Q96MF2 364 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 TRIM56Q9BRZ2 755 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 PHACTR1Q9C0D0 580 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 AVENQ9NQS1 362 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 PUF60Q9UHX1 559 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 LZTS1Q9Y250 596 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 CUX2O14529 1486 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 DYTNA2CJ06 578 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 DIAPH1O60610 1272 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 MYL3P08590 195 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 SMTNP53814 917 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 INTS6LQ5JSJ4 861 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 FAM26DQ5JW98 314 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 VARS2Q5ST30 1063 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 FBXL19Q6PCT2 694 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 CCDC174Q6PII3 467 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 CPXCR1Q8N123 301 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 TTC8Q8TAM2 541 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 LEO1Q8WVC0 666 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 ZNF180Q9UJW8 692 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 PARP3Q9Y6F1 533 aa2.91□□□□□ -1.94
CCDC88A-208ENST00000444458 STRN3Q13033 797 aa2.9□□□□□ -1.94
CCDC88A-208ENST00000444458 GK5Q6ZS86 529 aa2.9□□□□□ -1.94
CCDC88A-208ENST00000444458 MRPL50Q8N5N7 158 aaKnown RBP2.9□□□□□ -1.94
CCDC88A-208ENST00000444458 ZNF511Q8NB15 262 aa2.9□□□□□ -1.94
CCDC88A-208ENST00000444458 ZNF512BQ96KM6 892 aaPredicted RBP2.9□□□□□ -1.94
CCDC88A-208ENST00000444458 CEP63Q96MT8 703 aa2.9□□□□□ -1.94
CCDC88A-208ENST00000444458 CDC5LQ99459 802 aaKnown RBP2.9□□□□□ -1.94
CCDC88A-208ENST00000444458 CDC6Q99741 560 aa2.9□□□□□ -1.94
CCDC88A-208ENST00000444458 FAM126AQ9BYI3 521 aaPredicted RBP2.9□□□□□ -1.94
CCDC88A-208ENST00000444458 ARHGEF10LQ9HCE6 1279 aa2.9□□□□□ -1.94
CCDC88A-208ENST00000444458 WASHC2CQ9Y4E1 1318 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 RASSF10A6NK89 507 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 UBAP1LF5GYI3 381 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 AKAP10O43572 662 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 CCND1P24385 295 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 ZNF165P49910 485 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 EPHA4P54764 986 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 HIF1AQ16665 826 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 PRPF40BQ6NWY9 871 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 TPTE2Q6XPS3 522 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 SPATC1Q76KD6 591 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 DDX46Q7L014 1031 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 SH3RF1Q7Z6J0 888 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 LAPTM4BQ86VI4 370 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 RIN3Q8TB24 985 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 NINJ1Q92982 152 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 RUNDC1Q96C34 613 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 SHDQ96IW2 340 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 PKNOX2Q96KN3 472 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 OSBPL3Q9H4L5 887 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 AS3MTQ9HBK9 375 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 ZFYVE28Q9HCC9 887 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 MSRB2Q9Y3D2 182 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 MRPS23Q9Y3D9 190 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 SCINQ9Y6U3 715 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 GJB6O95452 261 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 APPP05067 770 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 FAM169BQ8N8A8 192 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 JARID2Q92833 1246 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 L3MBTL2Q969R5 705 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 TRERF1Q96PN7 1200 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 OXCT2Q9BYC2 517 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 SUV39H2Q9H5I1 410 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 USP25Q9UHP3 1055 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 TLR6Q9Y2C9 796 aa2.9□□□□□ -1.95
CCDC88A-208ENST00000444458 LOC100996750A0A140TA64 210 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 SLC26A4O43511 780 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 CALRP27797 417 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 COPS2P61201 443 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 MCL1Q07820 350 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 DHX9Q08211 1270 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 SETDB1Q15047 1291 aa2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 CWF19L2Q2TBE0 894 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-208ENST00000444458 PTCRAQ6ISU1 281 aaPredicted RBP2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms