RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CASQ1P31415 396 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 CCT2P78371 535 aaKnown RBP12.38□□□□□ -0.43
USP54-204ENST00000422491 PPP2R3AQ06190 1150 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 RABGGTAQ92696 567 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 LGR6Q9HBX8 967 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 NCOA5Q9HCD5 579 aaKnown RBP12.38□□□□□ -0.43
USP54-204ENST00000422491 PPP2R2CQ9Y2T4 447 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 CLIC4Q9Y696 253 aa12.38□□□□□ -0.43
USP54-204ENST00000422491 MAP2K7O14733 419 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 ZNF202O95125 648 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 TNNT3P45378 269 aaPredicted RBP12.37□□□□□ -0.43
USP54-204ENST00000422491 EXOSC10Q01780 885 aaKnown RBP12.37□□□□□ -0.43
USP54-204ENST00000422491 VSTM4Q8IW00 320 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 ARHGAP6O43182 974 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 PPFIA3O75145 1194 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 FDPSP14324 419 aaKnown RBP12.37□□□□□ -0.43
USP54-204ENST00000422491 ATP5JP18859 108 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 UBASH3AP57075 661 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 GOLGA8FQ08AF8 430 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 GOLGA8DPQ0D2H9 430 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 PROSER3Q2NL68 480 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 KCNG4Q8TDN1 519 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 KIFC2Q96AC6 838 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 POLR3EQ9NVU0 708 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 RRP15Q9Y3B9 282 aaKnown RBP12.37□□□□□ -0.43
USP54-204ENST00000422491 TSPOAP1O95153 1857 aa12.37□□□□□ -0.43
USP54-204ENST00000422491 DHX16O60231 1041 aaKnown RBP12.36□□□□□ -0.43
USP54-204ENST00000422491 YEATS4O95619 227 aa12.36□□□□□ -0.43
USP54-204ENST00000422491 ACTN2P35609 894 aa12.36□□□□□ -0.43
USP54-204ENST00000422491 LMAN1P49257 510 aa12.36□□□□□ -0.43
USP54-204ENST00000422491 LONRF2Q1L5Z9 754 aa12.36□□□□□ -0.43
USP54-204ENST00000422491 KLHDC4Q8TBB5 520 aa12.36□□□□□ -0.43
USP54-204ENST00000422491 CCDC151A5D8V7 595 aa12.36□□□□□ -0.43
USP54-204ENST00000422491 CBFA2T2O43439 604 aa12.36□□□□□ -0.43
USP54-204ENST00000422491 IRX3P78415 501 aaPredicted RBP12.36□□□□□ -0.43
USP54-204ENST00000422491 STK38Q15208 465 aa12.36□□□□□ -0.43
USP54-204ENST00000422491 MCMDC2Q4G0Z9 681 aa12.36□□□□□ -0.43
USP54-204ENST00000422491 FAM177A1Q8N128 213 aaPredicted RBP12.36□□□□□ -0.43
USP54-204ENST00000422491 LINS1Q8NG48 757 aa12.36□□□□□ -0.43
USP54-204ENST00000422491 ADAMTS13Q76LX8 1427 aa12.36□□□□□ -0.43
USP54-204ENST00000422491 PLEKHG2Q9H7P9 1386 aa12.36□□□□□ -0.43
USP54-204ENST00000422491 SPTLC2O15270 562 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 PDIA3P30101 505 aaKnown RBP12.35□□□□□ -0.43
USP54-204ENST00000422491 GNG11P61952 73 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 GNL2Q13823 731 aaKnown RBP12.35□□□□□ -0.43
USP54-204ENST00000422491 TUBE1Q9UJT0 475 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 DBNLQ9UJU6 430 aaKnown RBP12.35□□□□□ -0.43
USP54-204ENST00000422491 NDUFB9Q9Y6M9 179 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 MARF1Q9Y4F3 1742 aaKnown RBP12.35□□□□□ -0.43
USP54-204ENST00000422491 GOLGA6L9A6NEM1 432 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 TMEM232C9JQI7 657 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 TXLNAP40222 546 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 SF3A1Q15459 793 aaKnown RBP12.35□□□□□ -0.43
USP54-204ENST00000422491 AXDND1Q5T1B0 1012 aaPredicted RBP12.35□□□□□ -0.43
USP54-204ENST00000422491 JAKMIP3Q5VZ66 844 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 CERS3Q8IU89 383 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 USHBP1Q8N6Y0 703 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 GOLGA1Q92805 767 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 SERPINC1P01008 464 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 TOP1P11387 765 aaKnown RBP12.35□□□□□ -0.43
USP54-204ENST00000422491 PFKFB1P16118 471 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 MYL5Q02045 173 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 CFAP100Q494V2 611 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 ZNF274Q96GC6 653 aaPredicted RBP12.35□□□□□ -0.43
USP54-204ENST00000422491 INTS13Q9NVM9 706 aa12.35□□□□□ -0.43
USP54-204ENST00000422491 BRD3Q15059 726 aa12.34□□□□□ -0.43
USP54-204ENST00000422491 ISM2Q6H9L7 571 aa12.34□□□□□ -0.43
USP54-204ENST00000422491 DHX58Q96C10 678 aa12.34□□□□□ -0.43
USP54-204ENST00000422491 LTV1Q96GA3 475 aaPredicted RBP12.34□□□□□ -0.43
USP54-204ENST00000422491 DIP2BQ9P265 1576 aa12.34□□□□□ -0.43
USP54-204ENST00000422491 MROH7-TTC4A0A0A0MT08 1334 aa12.34□□□□□ -0.43
USP54-204ENST00000422491 BTBD11A6QL63 1104 aa12.34□□□□□ -0.43
USP54-204ENST00000422491 CMA1P23946 247 aa12.34□□□□□ -0.43
USP54-204ENST00000422491 TBX2Q13207 712 aaPredicted RBP12.34□□□□□ -0.43
USP54-204ENST00000422491 PTPN21Q16825 1174 aa12.34□□□□□ -0.43
USP54-204ENST00000422491 CTR9Q6PD62 1173 aa12.34□□□□□ -0.43
USP54-204ENST00000422491 YY1AP1Q9H869 796 aa12.34□□□□□ -0.43
USP54-204ENST00000422491 RPS6KA5O75582 802 aa12.33□□□□□ -0.44
USP54-204ENST00000422491 POLR3DP05423 398 aaPredicted RBP12.33□□□□□ -0.44
USP54-204ENST00000422491 TEFQ10587 303 aa12.33□□□□□ -0.44
USP54-204ENST00000422491 MYSM1Q5VVJ2 828 aa12.33□□□□□ -0.44
USP54-204ENST00000422491 OTUD7BQ6GQQ9 843 aa12.33□□□□□ -0.44
USP54-204ENST00000422491 HNRNPLLQ8WVV9 542 aaKnown RBP12.33□□□□□ -0.44
USP54-204ENST00000422491 BAG1Q99933 345 aaPredicted RBP12.33□□□□□ -0.44
USP54-204ENST00000422491 SH3TC1Q8TE82 1336 aa12.33□□□□□ -0.44
USP54-204ENST00000422491 NLRP6P59044 892 aa12.33□□□□□ -0.44
USP54-204ENST00000422491 TOGARAM2Q6ZUX3 1019 aa12.33□□□□□ -0.44
USP54-204ENST00000422491 ANKARQ7Z5J8 1434 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 MYO1BO43795 1136 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 STX10O60499 249 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 IVLP07476 585 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 HDGFP51858 240 aaKnown RBP12.32□□□□□ -0.44
USP54-204ENST00000422491 TNNI3KQ59H18 835 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 BEND6Q5SZJ8 279 aaPredicted RBP12.32□□□□□ -0.44
USP54-204ENST00000422491 MSL3Q8N5Y2 521 aaKnown RBP12.32□□□□□ -0.44
USP54-204ENST00000422491 NGDNQ8NEJ9 315 aaKnown RBP12.32□□□□□ -0.44
USP54-204ENST00000422491 HAUS7Q99871 368 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 FPGT-TNNI3KV9GXZ4 949 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 HEG1Q9ULI3 1381 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 A0A0G2JLW4 131 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms