RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 LRRC2Q9BYS8 371 aa29.24■■■□□ 2.27
DNMT3A-206ENST00000406659 TAF1LQ8IZX4 1826 aa29.23■■■□□ 2.27
DNMT3A-206ENST00000406659 MAP3K12Q12852 859 aa29.23■■■□□ 2.27
DNMT3A-206ENST00000406659 FOXD4L6Q3SYB3 417 aaPredicted RBP29.23■■■□□ 2.27
DNMT3A-206ENST00000406659 FOXD4L3Q6VB84 417 aaPredicted RBP29.23■■■□□ 2.27
DNMT3A-206ENST00000406659 BRF1Q92994 677 aa29.23■■■□□ 2.27
DNMT3A-206ENST00000406659 NLRP3Q96P20 1036 aa29.23■■■□□ 2.27
DNMT3A-206ENST00000406659 ATP6V1DQ9Y5K8 247 aa29.23■■■□□ 2.27
DNMT3A-206ENST00000406659 F13A1P00488 732 aa29.22■■■□□ 2.27
DNMT3A-206ENST00000406659 RFC4P35249 363 aa29.22■■■□□ 2.27
DNMT3A-206ENST00000406659 TRAPPC3LQ5T215 181 aa29.22■■■□□ 2.27
DNMT3A-206ENST00000406659 WWC3Q9ULE0 1092 aa29.22■■■□□ 2.27
DNMT3A-206ENST00000406659 ISY1Q9ULR0 285 aaKnown RBP29.22■■■□□ 2.27
DNMT3A-206ENST00000406659 PDCP20941 246 aa29.21■■■□□ 2.27
DNMT3A-206ENST00000406659 LARP1BQ659C4 914 aaKnown RBP29.21■■■□□ 2.27
DNMT3A-206ENST00000406659 GTF3C6Q969F1 213 aa29.21■■■□□ 2.27
DNMT3A-206ENST00000406659 DTNBO60941 627 aa29.21■■■□□ 2.27
DNMT3A-206ENST00000406659 AMIGO3Q86WK7 504 aa29.21■■■□□ 2.27
DNMT3A-206ENST00000406659 MTMR6Q9Y217 621 aa29.21■■■□□ 2.27
DNMT3A-206ENST00000406659 MYO5AQ9Y4I1 1855 aaKnown RBP29.2■■■□□ 2.27
DNMT3A-206ENST00000406659 TCRBV5S4A2TA0A5A2 114 aa29.2■■■□□ 2.26
DNMT3A-206ENST00000406659 HAND2P61296 217 aa29.2■■■□□ 2.26
DNMT3A-206ENST00000406659 COL4A1P02462 1669 aa29.19■■■□□ 2.26
DNMT3A-206ENST00000406659 PHF14O94880 888 aa29.19■■■□□ 2.26
DNMT3A-206ENST00000406659 UBE4AQ14139 1066 aa29.19■■■□□ 2.26
DNMT3A-206ENST00000406659 FAM196AQ6ZSG2 479 aa29.19■■■□□ 2.26
DNMT3A-206ENST00000406659 C4BP0C0L5 1744 aa29.19■■■□□ 2.26
DNMT3A-206ENST00000406659 VPS37CA5D8V6 355 aaPredicted RBP29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 ZNF213O14771 459 aa29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 COL24A1Q17RW2 1714 aa29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 CAVIN1Q6NZI2 390 aaKnown RBP29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 GPT2Q8TD30 523 aa29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 GNL3LQ9NVN8 582 aaKnown RBP29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 MINPP1Q9UNW1 487 aa29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 CASZ1Q86V15 1759 aa29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 MBD3O95983 291 aa29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 MAGEB6Q8N7X4 407 aa29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 CELF1Q92879 486 aaKnown RBP29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 AIDAQ96BJ3 306 aa29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 AGXT2Q9BYV1 514 aa29.18■■■□□ 2.26
DNMT3A-206ENST00000406659 APPP05067 770 aa29.17■■■□□ 2.26
DNMT3A-206ENST00000406659 NPHP1O15259 732 aa29.16■■■□□ 2.26
DNMT3A-206ENST00000406659 PFKFB2O60825 505 aa29.16■■■□□ 2.26
DNMT3A-206ENST00000406659 RPS8P62241 208 aaKnown RBP29.16■■■□□ 2.26
DNMT3A-206ENST00000406659 APOBRQ0VD83 1088 aa29.16■■■□□ 2.26
DNMT3A-206ENST00000406659 TAF1P21675 1872 aa29.15■■■□□ 2.26
DNMT3A-206ENST00000406659 MRE11P49959 708 aa29.15■■■□□ 2.26
DNMT3A-206ENST00000406659 USP48Q86UV5 1035 aa29.15■■■□□ 2.26
DNMT3A-206ENST00000406659 STRBPQ96SI9 672 aaKnown RBP29.15■■■□□ 2.26
DNMT3A-206ENST00000406659 CAVIN4Q5BKX8 364 aa29.14■■■□□ 2.26
DNMT3A-206ENST00000406659 CCDC24Q8N4L8 307 aa29.14■■■□□ 2.26
DNMT3A-206ENST00000406659 NCOA7Q8NI08 942 aa29.14■■■□□ 2.26
DNMT3A-206ENST00000406659 LRRC4BQ9NT99 713 aa29.14■■■□□ 2.26
DNMT3A-206ENST00000406659 DOCK2Q92608 1830 aa29.14■■■□□ 2.26
DNMT3A-206ENST00000406659 CHST3Q7LGC8 479 aa29.13■■■□□ 2.25
DNMT3A-206ENST00000406659 RALYLQ86SE5 291 aaKnown RBP29.13■■■□□ 2.25
DNMT3A-206ENST00000406659 GDPD2Q9HCC8 539 aa29.13■■■□□ 2.25
DNMT3A-206ENST00000406659 LRP2BPQ9P2M1 347 aa29.13■■■□□ 2.25
DNMT3A-206ENST00000406659 ADRA2BP18089 450 aa29.13■■■□□ 2.25
DNMT3A-206ENST00000406659 MCM5P33992 734 aa29.13■■■□□ 2.25
DNMT3A-206ENST00000406659 GYG1P46976 350 aa29.13■■■□□ 2.25
DNMT3A-206ENST00000406659 SCRN1Q12765 414 aa29.13■■■□□ 2.25
DNMT3A-206ENST00000406659 FBXL16Q8N461 479 aa29.13■■■□□ 2.25
DNMT3A-206ENST00000406659 LLPHQ9BRT6 129 aaKnown RBP29.13■■■□□ 2.25
DNMT3A-206ENST00000406659 CNPY2Q9Y2B0 182 aa29.13■■■□□ 2.25
DNMT3A-206ENST00000406659 ZNF804BA4D1E1 1349 aa29.13■■■□□ 2.25
DNMT3A-206ENST00000406659 VPS37DQ86XT2 251 aa29.12■■■□□ 2.25
DNMT3A-206ENST00000406659 TMEM87AQ8NBN3 555 aa29.12■■■□□ 2.25
DNMT3A-206ENST00000406659 CHMP4CQ96CF2 233 aa29.12■■■□□ 2.25
DNMT3A-206ENST00000406659 ZNF274Q96GC6 653 aaPredicted RBP29.12■■■□□ 2.25
DNMT3A-206ENST00000406659 NAP1L2Q9ULW6 460 aaPredicted RBP29.12■■■□□ 2.25
DNMT3A-206ENST00000406659 A0A1B0GUL6 1792 aa29.12■■■□□ 2.25
DNMT3A-206ENST00000406659 C4AP0C0L4 1744 aa29.12■■■□□ 2.25
DNMT3A-206ENST00000406659 MBD4O95243 580 aa29.11■■■□□ 2.25
DNMT3A-206ENST00000406659 XRCC6P12956 609 aaKnown RBP eCLIP29.11■■■□□ 2.25
DNMT3A-206ENST00000406659 ALX1Q15699 326 aa29.11■■■□□ 2.25
DNMT3A-206ENST00000406659 IQSEC3Q9UPP2 1182 aaPredicted RBP29.11■■■□□ 2.25
DNMT3A-206ENST00000406659 PATL2C9JE40 543 aaKnown RBP29.11■■■□□ 2.25
DNMT3A-206ENST00000406659 JAK2O60674 1132 aa29.11■■■□□ 2.25
DNMT3A-206ENST00000406659 TRDNQ13061 729 aa29.11■■■□□ 2.25
DNMT3A-206ENST00000406659 ZSCAN23Q3MJ62 389 aa29.11■■■□□ 2.25
DNMT3A-206ENST00000406659 KRT27Q7Z3Y8 459 aa29.11■■■□□ 2.25
DNMT3A-206ENST00000406659 MB21D2Q8IYB1 491 aaPredicted RBP29.11■■■□□ 2.25
DNMT3A-206ENST00000406659 ANKRD2Q9GZV1 360 aa29.11■■■□□ 2.25
DNMT3A-206ENST00000406659 GRPEL1Q9HAV7 217 aa29.11■■■□□ 2.25
DNMT3A-206ENST00000406659 CARMIL3Q8ND23 1372 aa29.1■■■□□ 2.25
DNMT3A-206ENST00000406659 PRC1O43663 620 aa29.1■■■□□ 2.25
DNMT3A-206ENST00000406659 GAS2L3Q86XJ1 694 aa29.1■■■□□ 2.25
DNMT3A-206ENST00000406659 RBM27Q9P2N5 1060 aaKnown RBP29.1■■■□□ 2.25
DNMT3A-206ENST00000406659 NFIXQ14938 502 aa29.09■■■□□ 2.25
DNMT3A-206ENST00000406659 CSPP1Q1MSJ5 1256 aa29.09■■■□□ 2.25
DNMT3A-206ENST00000406659 NSFL1CQ9UNZ2 370 aaKnown RBP29.09■■■□□ 2.25
DNMT3A-206ENST00000406659 TCHHQ07283 1943 aa29.09■■■□□ 2.25
DNMT3A-206ENST00000406659 WTIPA6NIX2 430 aaPredicted RBP29.08■■■□□ 2.25
DNMT3A-206ENST00000406659 PDIA3P30101 505 aaKnown RBP29.08■■■□□ 2.25
DNMT3A-206ENST00000406659 ZNF445P59923 1031 aa29.08■■■□□ 2.25
DNMT3A-206ENST00000406659 SLC27A3Q5K4L6 730 aa29.08■■■□□ 2.25
DNMT3A-206ENST00000406659 CDC37L1Q7L3B6 337 aa29.08■■■□□ 2.25
DNMT3A-206ENST00000406659 ARMT1Q9H993 441 aa29.08■■■□□ 2.25
DNMT3A-206ENST00000406659 WDR19Q8NEZ3 1342 aa29.08■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms