RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 LIMD1Q9UGP4 676 aa11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 CFAP45Q9UL16 551 aa11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 TTC41PQ6P2S7 1318 aa11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 PRAMEF22A3QJZ6 481 aa11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 BMS1Q14692 1282 aaKnown RBP11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 PROSER3Q2NL68 480 aa11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 MPRIPQ6WCQ1 1025 aa11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 UBXN4Q92575 508 aa11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 XPO4Q9C0E2 1151 aaKnown RBP11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 EPB41L2O43491 1005 aaKnown RBP11.51□□□□□ -0.57
PTCHD4-202ENST00000398738 SFPQP23246 707 aaKnown RBP eCLIP11.51□□□□□ -0.57
PTCHD4-202ENST00000398738 APOBRQ0VD83 1088 aa11.51□□□□□ -0.57
PTCHD4-202ENST00000398738 RESTQ13127 1097 aa11.51□□□□□ -0.57
PTCHD4-202ENST00000398738 NEK1Q96PY6 1258 aa11.51□□□□□ -0.57
PTCHD4-202ENST00000398738 TMUB1Q9BVT8 246 aa11.51□□□□□ -0.57
PTCHD4-202ENST00000398738 ZSWIM4Q9H7M6 989 aa11.51□□□□□ -0.57
PTCHD4-202ENST00000398738 DHX40Q8IX18 779 aaKnown RBP11.51□□□□□ -0.57
PTCHD4-202ENST00000398738 ESF1Q9H501 851 aaKnown RBP11.51□□□□□ -0.57
PTCHD4-202ENST00000398738 ANO10Q9NW15 660 aa11.51□□□□□ -0.57
PTCHD4-202ENST00000398738 SASH1O94885 1247 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 C6orf132Q5T0Z8 1188 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 E4F1Q66K89 784 aaPredicted RBP11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 STK11IPQ8N1F8 1099 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 MRFAP1L1Q96HT8 127 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 CALCOCO1Q9P1Z2 691 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 KIF20BQ96Q89 1820 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 SCRN1Q12765 414 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 DPCR1Q3MIW9 517 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 MYSM1Q5VVJ2 828 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 PPP1R13BQ96KQ4 1090 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 TNNT3P45378 269 aaPredicted RBP11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 QPCTQ16769 361 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 TMCO3Q6UWJ1 677 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 DDX46Q7L014 1031 aaKnown RBP11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 BICC1Q9H694 974 aaKnown RBP11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 LMTK3Q96Q04 1460 aa11.5□□□□□ -0.57
PTCHD4-202ENST00000398738 NEMFO60524 1076 aa11.49□□□□□ -0.57
PTCHD4-202ENST00000398738 CAPN2P17655 700 aa11.49□□□□□ -0.57
PTCHD4-202ENST00000398738 PIP4K2AP48426 406 aaPredicted RBP11.49□□□□□ -0.57
PTCHD4-202ENST00000398738 CARD6Q9BX69 1037 aa11.49□□□□□ -0.57
PTCHD4-202ENST00000398738 GJB4Q9NTQ9 266 aa11.49□□□□□ -0.57
PTCHD4-202ENST00000398738 FAM217BQ9NTX9 383 aaPredicted RBP11.49□□□□□ -0.57
PTCHD4-202ENST00000398738 PNMA6AP0CW24 399 aaPredicted RBP11.49□□□□□ -0.57
PTCHD4-202ENST00000398738 SUCLG2Q96I99 432 aa11.49□□□□□ -0.57
PTCHD4-202ENST00000398738 ANKRD26Q9UPS8 1709 aa11.49□□□□□ -0.57
PTCHD4-202ENST00000398738 MAP3K5Q99683 1374 aa11.49□□□□□ -0.57
PTCHD4-202ENST00000398738 ERBB3P21860 1342 aa11.49□□□□□ -0.57
PTCHD4-202ENST00000398738 ST5P78524 1137 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 ARMCX5Q6P1M9 558 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 RBM43Q6ZSC3 357 aaKnown RBP11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 A0A0G2JLW4 131 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 PTPDC1A2A3K4 754 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 BTBD11A6QL63 1104 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 SKIDA1Q1XH10 827 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 TEX35Q5T0J7 233 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 FHOD1Q9Y613 1164 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 ATP1A3P13637 1013 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 MYL6BP14649 208 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 NBPF11Q86T75 865 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 PDILTQ8N807 584 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 PXYLP1Q8TE99 480 aa11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 UTP14AQ9BVJ6 771 aaKnown RBP11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 NAT10Q9H0A0 1025 aaKnown RBP11.48□□□□□ -0.57
PTCHD4-202ENST00000398738 NRDCO43847 1150 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 TAF5LO75529 589 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 PLA2G4AP47712 749 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 STK38Q15208 465 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 ADGRG1Q9Y653 693 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 CDC25BP30305 580 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 NDUFA8P51970 172 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 EIF4A1P60842 406 aaKnown RBP11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 MYO5BQ9ULV0 1848 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 SERPINC1P01008 464 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 CYP21A2P08686 494 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 FAM160A1Q05DH4 1040 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 SARM1Q6SZW1 724 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 KRBA2Q6ZNG9 492 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 ERC1Q8IUD2 1116 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 ABTB2Q8N961 1025 aa11.47□□□□□ -0.57
PTCHD4-202ENST00000398738 HIP1O00291 1037 aa11.46□□□□□ -0.57
PTCHD4-202ENST00000398738 MARCKSP29966 332 aaPredicted RBP11.46□□□□□ -0.57
PTCHD4-202ENST00000398738 PROX2Q3B8N5 592 aa11.46□□□□□ -0.57
PTCHD4-202ENST00000398738 CFAP100Q494V2 611 aa11.46□□□□□ -0.57
PTCHD4-202ENST00000398738 C10orf67Q8IYJ2 551 aa11.46□□□□□ -0.57
PTCHD4-202ENST00000398738 ZSCAN16Q9H4T2 348 aaPredicted RBP11.46□□□□□ -0.57
PTCHD4-202ENST00000398738 PCDHA7Q9UN72 937 aa11.46□□□□□ -0.57
PTCHD4-202ENST00000398738 STRCQ7RTU9 1775 aa11.46□□□□□ -0.58
PTCHD4-202ENST00000398738 GSDMDP57764 484 aa11.46□□□□□ -0.58
PTCHD4-202ENST00000398738 NEUROD6Q96NK8 337 aa11.46□□□□□ -0.58
PTCHD4-202ENST00000398738 ARGLU1Q9NWB6 273 aaPredicted RBP11.46□□□□□ -0.58
PTCHD4-202ENST00000398738 FLT4P35916 1363 aa11.46□□□□□ -0.58
PTCHD4-202ENST00000398738 CTAGE5O15320 804 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 IGSF1Q8N6C5 1336 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 CAVIN2O95810 425 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 CYP2C19P33261 490 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 ADD1P35611 737 aaKnown RBP11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 EVCP57679 992 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 RIC3Q7Z5B4 369 aa11.45□□□□□ -0.58
PTCHD4-202ENST00000398738 SMARCE1Q969G3 411 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 314.1 ms