RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 ORC3Q9UBD5 711 aaPredicted RBP16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 ATP7BP35670 1465 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 SYNMO15061 1565 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 TBCAO75347 108 aaKnown RBP16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 CALM1P0DP23 149 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 CALM2P0DP24 149 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 CALM3P0DP25 149 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 HIBADHP31937 336 aaKnown RBP16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 CETN1Q12798 172 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 RIMS1Q86UR5 1692 aaKnown RBP16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 KRT24Q2M2I5 525 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 HOOK3Q86VS8 718 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 SMARCC2Q8TAQ2 1214 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 DPH6Q7L8W6 267 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 ZNF496Q96IT1 587 aaPredicted RBP16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 NEK1Q96PY6 1258 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 ZBTB21Q9ULJ3 1066 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 IGHDP01880 384 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 AMPD3Q01432 767 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 PRKG1Q13976 671 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 FAM212AQ96EL1 285 aa16.3■□□□□ 0.2
PCDHA11-201ENST00000398640 USO1O60763 962 aaKnown RBP16.29■□□□□ 0.2
PCDHA11-201ENST00000398640 TCIRG1Q13488 830 aa16.29■□□□□ 0.2
PCDHA11-201ENST00000398640 WTAPQ15007 396 aa16.29■□□□□ 0.2
PCDHA11-201ENST00000398640 TBC1D9Q6ZT07 1266 aa16.29■□□□□ 0.2
PCDHA11-201ENST00000398640 CCDC174Q6PII3 467 aa16.29■□□□□ 0.2
PCDHA11-201ENST00000398640 STXBP4Q6ZWJ1 553 aa16.29■□□□□ 0.2
PCDHA11-201ENST00000398640 LRRC2Q9BYS8 371 aa16.29■□□□□ 0.2
PCDHA11-201ENST00000398640 CDC42BPGQ6DT37 1551 aa16.29■□□□□ 0.2
PCDHA11-201ENST00000398640 TNPO1Q92973 898 aaKnown RBP16.29■□□□□ 0.2
PCDHA11-201ENST00000398640 UBA7P41226 1012 aa16.29■□□□□ 0.2
PCDHA11-201ENST00000398640 NOP2P46087 812 aaKnown RBP16.29■□□□□ 0.2
PCDHA11-201ENST00000398640 TMCO3Q6UWJ1 677 aa16.28■□□□□ 0.2
PCDHA11-201ENST00000398640 TMC6Q7Z403 805 aa16.28■□□□□ 0.2
PCDHA11-201ENST00000398640 TRAF1Q13077 416 aa16.28■□□□□ 0.2
PCDHA11-201ENST00000398640 MAPK8IP2Q13387 824 aaPredicted RBP16.28■□□□□ 0.2
PCDHA11-201ENST00000398640 CRKLP46109 303 aaKnown RBP16.28■□□□□ 0.2
PCDHA11-201ENST00000398640 SYNCQ9H7C4 482 aa16.28■□□□□ 0.2
PCDHA11-201ENST00000398640 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.28■□□□□ 0.2
PCDHA11-201ENST00000398640 BICC1Q9H694 974 aaKnown RBP16.28■□□□□ 0.2
PCDHA11-201ENST00000398640 USPL1Q5W0Q7 1092 aa16.27■□□□□ 0.2
PCDHA11-201ENST00000398640 MIGA1Q8NAN2 632 aa16.27■□□□□ 0.2
PCDHA11-201ENST00000398640 USP25Q9UHP3 1055 aa16.27■□□□□ 0.2
PCDHA11-201ENST00000398640 ATP8B2P98198 1209 aa16.27■□□□□ 0.2
PCDHA11-201ENST00000398640 GJD4Q96KN9 370 aaPredicted RBP16.27■□□□□ 0.2
PCDHA11-201ENST00000398640 TBC1D2Q9BYX2 928 aa16.27■□□□□ 0.2
PCDHA11-201ENST00000398640 PRDM10Q9NQV6 1147 aa16.27■□□□□ 0.2
PCDHA11-201ENST00000398640 PHACTR2O75167 634 aa16.27■□□□□ 0.2
PCDHA11-201ENST00000398640 SLC9C2Q5TAH2 1124 aa16.27■□□□□ 0.19
PCDHA11-201ENST00000398640 TNS3Q68CZ2 1445 aa16.27■□□□□ 0.19
PCDHA11-201ENST00000398640 GLI2P10070 1586 aa16.27■□□□□ 0.19
PCDHA11-201ENST00000398640 PA2G4Q9UQ80 394 aaKnown RBP16.27■□□□□ 0.19
PCDHA11-201ENST00000398640 ESPNB1AK53 854 aa16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 B4DLN1 442 aa16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 PAFAH1B1P43034 410 aa16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 MRPL12P52815 198 aaKnown RBP16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 TMOD4Q9NZQ9 345 aa16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 PABPN1LA6NDY0 278 aaKnown RBP16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 ARHGEF40Q8TER5 1519 aa16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 NECAB1Q8N987 351 aa16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 HLTFQ14527 1009 aaKnown RBP eCLIP16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 TSPYL6Q8N831 410 aa16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 SBNO2Q9Y2G9 1366 aa16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 DIP2BQ9P265 1576 aa16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 STX6O43752 255 aa16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 PUM3Q15397 648 aaKnown RBP16.26■□□□□ 0.19
PCDHA11-201ENST00000398640 PDCL2Q8N4E4 241 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 CAMSAP1Q5T5Y3 1602 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 KLF18A0A0U1RQI7 1052 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 CTAGE5O15320 804 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 TFCP2Q12800 502 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 MAGEB6Q8N7X4 407 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 TCHPQ9BT92 498 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 KRT23Q9C075 422 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 SAP30BPQ9UHR5 308 aaKnown RBP16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 AFMP43652 599 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 NAPAP54920 295 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 AKNAD1Q5T1N1 836 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 GNAT2P19087 354 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 LMAN1P49257 510 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 MRPS9P82933 396 aaKnown RBP16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 TAF12Q16514 161 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 KIF18AQ8NI77 898 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 ERMNQ8TAM6 284 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 EXOC1Q9NV70 894 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 MCM9Q9NXL9 1143 aa16.25■□□□□ 0.19
PCDHA11-201ENST00000398640 VAMP4O75379 141 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 HSP90AA4PQ58FG1 418 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 TCEANC2Q96MN5 208 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 GBP3Q9H0R5 595 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 NPC1L1Q9UHC9 1359 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 SH2D4AQ9H788 454 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 CBX1P83916 185 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 RAB3GAP1Q15042 981 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 HOMER2Q9NSB8 354 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 PAG1Q9NWQ8 432 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 SPECC1Q5M775 1068 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 ALS2CR12Q96Q35 445 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 PKD2L1Q9P0L9 805 aa16.24■□□□□ 0.19
PCDHA11-201ENST00000398640 PRR36Q9H6K5 1346 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms