RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 PARP10Q53GL7 1025 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 KIAA1328Q86T90 577 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 E9PCH4 1651 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 GLI2P10070 1586 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 GNAT2P19087 354 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 TMEM132AQ24JP5 1023 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 ZC3H12CQ9C0D7 883 aaKnown RBP15.16■□□□□ 0.02
NPHP4-203ENST00000378169 STAP2Q9UGK3 403 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 ZKSCAN5Q9Y2L8 839 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 TRIM75PA6NK02 468 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 LPIN2Q92539 896 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 PHKBQ93100 1093 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 DHX58Q96C10 678 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 RAB34Q9BZG1 259 aa15.16■□□□□ 0.02
NPHP4-203ENST00000378169 ANGEL1Q9UNK9 670 aaKnown RBP15.16■□□□□ 0.02
NPHP4-203ENST00000378169 NPHP4O75161 1426 aaPredicted RBP15.15■□□□□ 0.02
NPHP4-203ENST00000378169 ZNF532Q9HCE3 1301 aa15.15■□□□□ 0.02
NPHP4-203ENST00000378169 PRKCSHP14314 528 aaPredicted RBP15.15■□□□□ 0.02
NPHP4-203ENST00000378169 UBASH3AP57075 661 aa15.15■□□□□ 0.02
NPHP4-203ENST00000378169 ODF2Q5BJF6 829 aa15.15■□□□□ 0.02
NPHP4-203ENST00000378169 PDCL2Q8N4E4 241 aa15.15■□□□□ 0.02
NPHP4-203ENST00000378169 NUP88Q99567 741 aaPredicted RBP15.15■□□□□ 0.02
NPHP4-203ENST00000378169 TMEM266Q2M3C6 531 aa15.15■□□□□ 0.02
NPHP4-203ENST00000378169 ACBD3Q9H3P7 528 aa15.15■□□□□ 0.02
NPHP4-203ENST00000378169 OSBPL3Q9H4L5 887 aa15.15■□□□□ 0.02
NPHP4-203ENST00000378169 COPRSQ9NQ92 184 aa15.14■□□□□ 0.01
NPHP4-203ENST00000378169 SEPT11Q9NVA2 429 aaKnown RBP15.14■□□□□ 0.01
NPHP4-203ENST00000378169 E7EWF7 191 aa15.14■□□□□ 0.01
NPHP4-203ENST00000378169 HLA-DOAP06340 250 aa15.14■□□□□ 0.01
NPHP4-203ENST00000378169 LDHBP07195 334 aaKnown RBP15.14■□□□□ 0.01
NPHP4-203ENST00000378169 SKILP12757 684 aa15.14■□□□□ 0.01
NPHP4-203ENST00000378169 TPCN1Q9ULQ1 816 aa15.14■□□□□ 0.01
NPHP4-203ENST00000378169 GSTO1P78417 241 aa15.14■□□□□ 0.01
NPHP4-203ENST00000378169 CTDSPL2Q05D32 466 aa15.14■□□□□ 0.01
NPHP4-203ENST00000378169 NOLC1Q14978 699 aaKnown RBP eCLIP15.14■□□□□ 0.012e-7■■■■■ 29.2
NPHP4-203ENST00000378169 SYCP1Q15431 976 aa15.14■□□□□ 0.01
NPHP4-203ENST00000378169 CCDC181Q5TID7 509 aa15.14■□□□□ 0.01
NPHP4-203ENST00000378169 CCDC12Q8WUD4 166 aaPredicted RBP15.14■□□□□ 0.01
NPHP4-203ENST00000378169 PDCL3Q9H2J4 239 aa15.14■□□□□ 0.01
NPHP4-203ENST00000378169 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.14■□□□□ 0.01
NPHP4-203ENST00000378169 ALKQ9UM73 1620 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 ZSCAN12O43309 604 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 GSDMDP57764 484 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 KIF4BQ2VIQ3 1234 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 TM6SF1Q9BZW5 370 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 ZBTB1Q9Y2K1 713 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 TRAPPC3LQ5T215 181 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 N4BP3O15049 544 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 DNA2P51530 1060 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 ERCC4Q92889 916 aaPredicted RBP15.13■□□□□ 0.01
NPHP4-203ENST00000378169 ABCA6Q8N139 1617 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 hCG_1642624A0A1W2PR95 340 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 STX17P56962 302 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 ZNF804AQ7Z570 1209 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 CNBD1Q8NA66 436 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 CABP5Q9NP86 173 aa15.13■□□□□ 0.01
NPHP4-203ENST00000378169 LUC7LQ9NQ29 371 aaKnown RBP15.13■□□□□ 0.01
NPHP4-203ENST00000378169 PTGS1P23219 599 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 HIBADHP31937 336 aaKnown RBP15.12■□□□□ 0.01
NPHP4-203ENST00000378169 MTIF2P46199 727 aaKnown RBP15.12■□□□□ 0.01
NPHP4-203ENST00000378169 KCNQ4P56696 695 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 SPATA5Q8NB90 893 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 LEO1Q8WVC0 666 aaPredicted RBP15.12■□□□□ 0.01
NPHP4-203ENST00000378169 FEZ1Q99689 392 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 GREM2Q9H772 168 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 ADORA1P30542 326 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 CTSWP56202 376 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 LSG1Q9H089 658 aaKnown RBP15.12■□□□□ 0.01
NPHP4-203ENST00000378169 CYP27B1O15528 508 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 NAPAP54920 295 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 KANK3Q6NY19 840 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 CACNA2D4Q7Z3S7 1137 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 BRAPQ7Z569 592 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 CALML4Q96GE6 196 aa15.12■□□□□ 0.01
NPHP4-203ENST00000378169 CDCA7Q9BWT1 371 aaPredicted RBP15.12■□□□□ 0.01
NPHP4-203ENST00000378169 AATFQ9NY61 560 aaKnown RBP eCLIP15.12■□□□□ 0.011e-7■■■■■ 28.7
NPHP4-203ENST00000378169 HSPD1P10809 573 aaKnown RBP15.11■□□□□ 0.01
NPHP4-203ENST00000378169 SPECC1Q5M775 1068 aa15.11■□□□□ 0.01
NPHP4-203ENST00000378169 ZNF589Q86UQ0 364 aaPredicted RBP15.11■□□□□ 0.01
NPHP4-203ENST00000378169 PNPLA6Q8IY17 1366 aa15.11■□□□□ 0.01
NPHP4-203ENST00000378169 FKBP15Q5T1M5 1219 aa15.11■□□□□ 0.01
NPHP4-203ENST00000378169 RRAGBQ5VZM2 374 aa15.11■□□□□ 0.01
NPHP4-203ENST00000378169 ZBTB38Q8NAP3 1195 aaPredicted RBP15.11■□□□□ 0.01
NPHP4-203ENST00000378169 SAP30BPQ9UHR5 308 aaKnown RBP15.11■□□□□ 0.01
NPHP4-203ENST00000378169 KIF2AO00139 706 aaPredicted RBP15.11■□□□□ 0.01
NPHP4-203ENST00000378169 NEMFO60524 1076 aa15.11■□□□□ 0.01
NPHP4-203ENST00000378169 AXDND1Q5T1B0 1012 aaPredicted RBP15.11■□□□□ 0.01
NPHP4-203ENST00000378169 PLIN2Q99541 437 aa15.11■□□□□ 0.01
NPHP4-203ENST00000378169 ADGRB3O60242 1522 aa15.11■□□□□ 0.01
NPHP4-203ENST00000378169 SASH1O94885 1247 aa15.1■□□□□ 0.01
NPHP4-203ENST00000378169 MCM7P33993 719 aa15.1■□□□□ 0.01
NPHP4-203ENST00000378169 HAUS7Q99871 368 aa15.1■□□□□ 0.01
NPHP4-203ENST00000378169 ZSWIM4Q9H7M6 989 aa15.1■□□□□ 0.01
NPHP4-203ENST00000378169 DENND2AQ9ULE3 1009 aa15.1■□□□□ 0.01
NPHP4-203ENST00000378169 PI16Q6UXB8 463 aa15.1■□□□□ 0.01
NPHP4-203ENST00000378169 TRIM47Q96LD4 638 aa15.1■□□□□ 0.01
NPHP4-203ENST00000378169 ANKRD2Q9GZV1 360 aa15.1■□□□□ 0.01
NPHP4-203ENST00000378169 ANTXR1Q9H6X2 564 aa15.1■□□□□ 0.01
NPHP4-203ENST00000378169 ZSWIM6Q9HCJ5 1215 aa15.1■□□□□ 0.01
NPHP4-203ENST00000378169 RRAGDQ9NQL2 400 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms