RNA–Protein interactions for RNA: ENST00000374541.3

PTPN3-202, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPN3, Length 6,703 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-202ENST00000374541 SRGAP3O43295 1099 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 GRIPAP1Q4V328 841 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 AACSQ86V21 672 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 ZFYVE28Q9HCC9 887 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 ARHGEF10LQ9HCE6 1279 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 GOLIM4O00461 696 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 FERP16591 822 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 CEBPZQ03701 1054 aaKnown RBP7.19□□□□□ -1.26
PTPN3-202ENST00000374541 FAM177A1Q8N128 213 aaPredicted RBP7.19□□□□□ -1.26
PTPN3-202ENST00000374541 SREK1Q8WXA9 508 aaKnown RBP7.19□□□□□ -1.26
PTPN3-202ENST00000374541 PAXBP1Q9Y5B6 917 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 RNMTO43148 476 aaKnown RBP7.19□□□□□ -1.26
PTPN3-202ENST00000374541 HMGB1P09429 215 aaKnown RBP7.19□□□□□ -1.26
PTPN3-202ENST00000374541 TRAF1Q13077 416 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 DGKZQ13574 1117 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 IFI16Q16666 785 aaKnown RBP7.19□□□□□ -1.26
PTPN3-202ENST00000374541 DEFB115Q30KQ5 88 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 CCDC150Q8NCX0 1101 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 DBNDD1Q9H9R9 158 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 RNF187Q5TA31 235 aaPredicted RBP7.19□□□□□ -1.26
PTPN3-202ENST00000374541 CTR9Q6PD62 1173 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 FAM114A1Q8IWE2 563 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 FERMT1Q9BQL6 677 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 AP5M1Q9H0R1 490 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 FSD2A1L4K1 749 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 HSPA4P34932 840 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 PDE4BQ07343 736 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 TNPO1Q92973 898 aaKnown RBP7.19□□□□□ -1.26
PTPN3-202ENST00000374541 STMN4Q9H169 189 aaPredicted RBP7.19□□□□□ -1.26
PTPN3-202ENST00000374541 STK24Q9Y6E0 443 aa7.19□□□□□ -1.26
PTPN3-202ENST00000374541 CKAP4Q07065 602 aaKnown RBP7.18□□□□□ -1.26
PTPN3-202ENST00000374541 NAA16Q6N069 864 aaPredicted RBP7.18□□□□□ -1.26
PTPN3-202ENST00000374541 CHD1LQ86WJ1 897 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 TIGD1Q96MW7 591 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 NAPBQ9H115 298 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 CPS1P31327 1500 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 CLRN2A0PK11 232 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 ATP2B4P23634 1241 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 HIBADHP31937 336 aaKnown RBP7.18□□□□□ -1.26
PTPN3-202ENST00000374541 CETN1Q12798 172 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 TAF1CQ15572 869 aaPredicted RBP7.18□□□□□ -1.26
PTPN3-202ENST00000374541 ELMSAN1Q6PJG2 1045 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 CACNA2D4Q7Z3S7 1137 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 RETREG2Q8NC44 543 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 MBIPQ9NS73 344 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 ZBED4O75132 1171 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 ANXA1P04083 346 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 CHRNA5P30532 468 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 DAAM2Q86T65 1068 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 NCAPG2Q86XI2 1143 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 TTF2Q9UNY4 1162 aaKnown RBP7.18□□□□□ -1.26
PTPN3-202ENST00000374541 CCDC171Q6TFL3 1326 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 URI1O94763 535 aaPredicted RBP7.18□□□□□ -1.26
PTPN3-202ENST00000374541 HELBQ8NG08 1087 aaPredicted RBP7.18□□□□□ -1.26
PTPN3-202ENST00000374541 DNAAF4Q8WXU2 420 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 TTC14Q96N46 770 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 SRP68Q9UHB9 627 aaKnown RBP7.18□□□□□ -1.26
PTPN3-202ENST00000374541 POLR3AO14802 1390 aaPredicted RBP7.18□□□□□ -1.26
PTPN3-202ENST00000374541 TICAM2Q86XR7 235 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 TSNARE1Q96NA8 513 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 CCDC113Q9H0I3 377 aa7.18□□□□□ -1.26
PTPN3-202ENST00000374541 KIF28PB7ZC32 967 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 A1BGP04217 495 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 PRKCSHP14314 528 aaPredicted RBP7.17□□□□□ -1.26
PTPN3-202ENST00000374541 EXOSC9Q06265 439 aaKnown RBP7.17□□□□□ -1.26
PTPN3-202ENST00000374541 TMC4Q7Z404 712 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 PPP2R3CQ969Q6 453 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 TEKT1Q969V4 418 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 LRRC27Q9C0I9 530 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 NOP56O00567 594 aaKnown RBP7.17□□□□□ -1.26
PTPN3-202ENST00000374541 JAKMIP1Q96N16 626 aaKnown RBP7.17□□□□□ -1.26
PTPN3-202ENST00000374541 PLVAPQ9BX97 442 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 VAT1LQ9HCJ6 419 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 TSPY2A6NKD2 308 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 DPEP1P16444 411 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 CCDC97Q96F63 343 aaPredicted RBP7.17□□□□□ -1.26
PTPN3-202ENST00000374541 SRRTQ9BXP5 876 aaKnown RBP7.17□□□□□ -1.26
PTPN3-202ENST00000374541 CLIP2Q9UDT6 1046 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 ABCA9Q8IUA7 1624 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 TUBBP07437 444 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 UQCRFS1P1P0C7P4 283 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 CCDC172P0C7W6 258 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 SSR1P43307 286 aaKnown RBP7.17□□□□□ -1.26
PTPN3-202ENST00000374541 CCDC178Q5BJE1 867 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 SPECC1Q5M775 1068 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 CNPY2Q9Y2B0 182 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 MLH3Q9UHC1 1453 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 MAP3K19Q56UN5 1328 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 HMGB1P1B2RPK0 211 aaPredicted RBP7.17□□□□□ -1.26
PTPN3-202ENST00000374541 RAB11FIP3O75154 756 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 SEPT6Q14141 434 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 TMEM266Q2M3C6 531 aa7.17□□□□□ -1.26
PTPN3-202ENST00000374541 U3KPZ7 1027 aaPredicted RBP7.17□□□□□ -1.26
PTPN3-202ENST00000374541 SSBP05455 408 aaKnown RBP eCLIP7.16□□□□□ -1.26
PTPN3-202ENST00000374541 TNNT1P13805 278 aa7.16□□□□□ -1.26
PTPN3-202ENST00000374541 PPP2R1AP30153 589 aa7.16□□□□□ -1.26
PTPN3-202ENST00000374541 KANK3Q6NY19 840 aa7.16□□□□□ -1.26
PTPN3-202ENST00000374541 ASAP1Q9ULH1 1129 aa7.16□□□□□ -1.26
PTPN3-202ENST00000374541 TSPY3P0CV98 308 aa7.16□□□□□ -1.26
PTPN3-202ENST00000374541 TSPY8P0CW00 308 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms