RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 ILDR1Q86SU0 546 aaPredicted RBP16.7■□□□□ 0.26
CD48-201ENST00000368045 KCNG4Q8TDN1 519 aa16.7■□□□□ 0.26
CD48-201ENST00000368045 MRPS27Q92552 414 aaKnown RBP16.7■□□□□ 0.26
CD48-201ENST00000368045 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.7■□□□□ 0.26
CD48-201ENST00000368045 TMOD3Q9NYL9 352 aa16.7■□□□□ 0.26
CD48-201ENST00000368045 CLIP2Q9UDT6 1046 aa16.7■□□□□ 0.26
CD48-201ENST00000368045 MYH15Q9Y2K3 1946 aa16.7■□□□□ 0.26
CD48-201ENST00000368045 A0A0G2JLW4 131 aa16.69■□□□□ 0.26
CD48-201ENST00000368045 FOXP2O15409 715 aa16.69■□□□□ 0.26
CD48-201ENST00000368045 PRC1O43663 620 aa16.69■□□□□ 0.26
CD48-201ENST00000368045 FDPSP14324 419 aaKnown RBP16.69■□□□□ 0.26
CD48-201ENST00000368045 ADORA1P30542 326 aa16.69■□□□□ 0.26
CD48-201ENST00000368045 ME1P48163 572 aa16.69■□□□□ 0.26
CD48-201ENST00000368045 ADALQ6DHV7 355 aa16.69■□□□□ 0.26
CD48-201ENST00000368045 TTLL5Q6EMB2 1281 aa16.69■□□□□ 0.26
CD48-201ENST00000368045 FSIP1Q8NA03 581 aa16.69■□□□□ 0.26
CD48-201ENST00000368045 NCOA7Q8NI08 942 aa16.69■□□□□ 0.26
CD48-201ENST00000368045 FGAP02671 866 aa16.69■□□□□ 0.26
CD48-201ENST00000368045 CEP57L1Q8IYX8 460 aa16.69■□□□□ 0.26
CD48-201ENST00000368045 NAT10Q9H0A0 1025 aaKnown RBP16.69■□□□□ 0.26
CD48-201ENST00000368045 POLR3EQ9NVU0 708 aa16.69■□□□□ 0.26
CD48-201ENST00000368045 STARD3NLO95772 234 aa16.68■□□□□ 0.26
CD48-201ENST00000368045 ZAP70P43403 619 aa16.68■□□□□ 0.26
CD48-201ENST00000368045 FOSBP53539 338 aa16.68■□□□□ 0.26
CD48-201ENST00000368045 TTF1Q15361 905 aaPredicted RBP16.68■□□□□ 0.26
CD48-201ENST00000368045 ATP2B3Q16720 1220 aa16.68■□□□□ 0.26
CD48-201ENST00000368045 HSP90AB3PQ58FF7 597 aa16.68■□□□□ 0.26
CD48-201ENST00000368045 RALYLQ86SE5 291 aaKnown RBP16.68■□□□□ 0.26
CD48-201ENST00000368045 FMR1NBQ8N0W7 255 aaPredicted RBP16.68■□□□□ 0.26
CD48-201ENST00000368045 C8orf76Q96K31 380 aa16.68■□□□□ 0.26
CD48-201ENST00000368045 FTOQ9C0B1 505 aaKnown RBP eCLIP16.68■□□□□ 0.26
CD48-201ENST00000368045 ATRNO75882 1429 aa16.68■□□□□ 0.26
CD48-201ENST00000368045 SHANK3Q9BYB0 1731 aa16.68■□□□□ 0.26
CD48-201ENST00000368045 KLF18A0A0U1RQI7 1052 aa16.67■□□□□ 0.26
CD48-201ENST00000368045 GIGYF2Q6Y7W6 1299 aaKnown RBP16.67■□□□□ 0.26
CD48-201ENST00000368045 C11orf57Q6ZUT1 292 aaPredicted RBP16.67■□□□□ 0.26
CD48-201ENST00000368045 CHST3Q7LGC8 479 aa16.67■□□□□ 0.26
CD48-201ENST00000368045 LINC00301Q8NCQ3 95 aa16.67■□□□□ 0.26
CD48-201ENST00000368045 FBXO18Q8NFZ0 1043 aa16.67■□□□□ 0.26
CD48-201ENST00000368045 PCDHA7Q9UN72 937 aa16.67■□□□□ 0.26
CD48-201ENST00000368045 MAP3K15Q6ZN16 1313 aa16.67■□□□□ 0.26
CD48-201ENST00000368045 RIC1Q4ADV7 1423 aa16.67■□□□□ 0.26
CD48-201ENST00000368045 GOLGA8BA8MQT2 603 aa16.66■□□□□ 0.26
CD48-201ENST00000368045 BECN2A8MW95 431 aa16.66■□□□□ 0.26
CD48-201ENST00000368045 ZNF213O14771 459 aa16.66■□□□□ 0.26
CD48-201ENST00000368045 ORC3Q9UBD5 711 aaPredicted RBP16.66■□□□□ 0.26
CD48-201ENST00000368045 HPS5Q9UPZ3 1129 aa16.66■□□□□ 0.26
CD48-201ENST00000368045 RIPOR2Q9Y4F9 1068 aa16.66■□□□□ 0.26
CD48-201ENST00000368045 GPAA1O43292 621 aa16.66■□□□□ 0.26
CD48-201ENST00000368045 GUCY1B3Q02153 619 aa16.66■□□□□ 0.26
CD48-201ENST00000368045 SCARF1Q14162 830 aa16.66■□□□□ 0.26
CD48-201ENST00000368045 STK38Q15208 465 aa16.66■□□□□ 0.26
CD48-201ENST00000368045 METTL24Q5JXM2 366 aa16.66■□□□□ 0.26
CD48-201ENST00000368045 BPIFA3Q9BQP9 254 aa16.66■□□□□ 0.26
CD48-201ENST00000368045 CPLX1O14810 134 aa16.65■□□□□ 0.26
CD48-201ENST00000368045 ANTXR2P58335 489 aa16.65■□□□□ 0.26
CD48-201ENST00000368045 FAM89AQ96GI7 184 aa16.65■□□□□ 0.26
CD48-201ENST00000368045 PUS7LQ9H0K6 701 aaKnown RBP16.65■□□□□ 0.26
CD48-201ENST00000368045 NRBP1Q9UHY1 535 aa16.65■□□□□ 0.26
CD48-201ENST00000368045 NWD2Q9ULI1 1742 aa16.64■□□□□ 0.26
CD48-201ENST00000368045 CTIFO43310 598 aaKnown RBP16.64■□□□□ 0.25
CD48-201ENST00000368045 CDKL5O76039 1030 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 ADD2P35612 726 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 HAND2P61296 217 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 TRDNQ13061 729 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 SYCP1Q15431 976 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 SF3A1Q15459 793 aaKnown RBP16.64■□□□□ 0.25
CD48-201ENST00000368045 MYSM1Q5VVJ2 828 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 DHX40Q8IX18 779 aaKnown RBP16.64■□□□□ 0.25
CD48-201ENST00000368045 ANKRD18BA2A2Z9 1011 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 RIOK3O14730 519 aaKnown RBP16.64■□□□□ 0.25
CD48-201ENST00000368045 SPTLC2O15270 562 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 EVA1CP58658 441 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 RBM6P78332 1123 aaKnown RBP16.64■□□□□ 0.25
CD48-201ENST00000368045 LRMPQ12912 555 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 DHX8Q14562 1220 aaKnown RBP16.64■□□□□ 0.25
CD48-201ENST00000368045 UBE3CQ15386 1083 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 DNAJC10Q8IXB1 793 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 CACTINQ8WUQ7 758 aaKnown RBP16.64■□□□□ 0.25
CD48-201ENST00000368045 SDF4Q9BRK5 362 aa16.64■□□□□ 0.25
CD48-201ENST00000368045 CCDC94Q9BW85 323 aaPredicted RBP16.64■□□□□ 0.25
CD48-201ENST00000368045 GPHNQ9NQX3 736 aaPredicted RBP16.64■□□□□ 0.25
CD48-201ENST00000368045 ZMYM6O95789 1325 aa16.63■□□□□ 0.25
CD48-201ENST00000368045 SMTNL1A8MU46 457 aa16.63■□□□□ 0.25
CD48-201ENST00000368045 UQCRFS1P1P0C7P4 283 aa16.63■□□□□ 0.25
CD48-201ENST00000368045 ITGA6P23229 1130 aa16.63■□□□□ 0.25
CD48-201ENST00000368045 CTSWP56202 376 aa16.63■□□□□ 0.25
CD48-201ENST00000368045 LDHAL6AQ6ZMR3 332 aa16.63■□□□□ 0.25
CD48-201ENST00000368045 SYNE3Q6ZMZ3 975 aa16.63■□□□□ 0.25
CD48-201ENST00000368045 NLRP10Q86W26 655 aa16.63■□□□□ 0.25
CD48-201ENST00000368045 ZNF710Q8N1W2 664 aa16.63■□□□□ 0.25
CD48-201ENST00000368045 TTLL11Q8NHH1 800 aa16.63■□□□□ 0.25
CD48-201ENST00000368045 PAXBP1Q9Y5B6 917 aa16.63■□□□□ 0.25
CD48-201ENST00000368045 TOGARAM1Q9Y4F4 1720 aa16.63■□□□□ 0.25
CD48-201ENST00000368045 DDX60Q8IY21 1712 aaKnown RBP16.62■□□□□ 0.25
CD48-201ENST00000368045 MCAMP43121 646 aa16.62■□□□□ 0.25
CD48-201ENST00000368045 GSDMDP57764 484 aa16.62■□□□□ 0.25
CD48-201ENST00000368045 KIF23Q02241 960 aaPredicted RBP16.62■□□□□ 0.25
CD48-201ENST00000368045 ZRSR1Q15695 479 aaKnown RBP16.62■□□□□ 0.25
CD48-201ENST00000368045 CCDC144BQ3MJ40 725 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms