RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 IL15P40933 162 aaPredicted RBP14.14□□□□□ -0.15
CLIP3-201ENST00000360535 CCDC158Q5M9N0 1113 aa14.14□□□□□ -0.15
CLIP3-201ENST00000360535 ZSCAN20P17040 1043 aaPredicted RBP14.14□□□□□ -0.15
CLIP3-201ENST00000360535 ZAP70P43403 619 aa14.14□□□□□ -0.15
CLIP3-201ENST00000360535 DSCC1Q9BVC3 393 aa14.14□□□□□ -0.15
CLIP3-201ENST00000360535 MEGF6O75095 1541 aa14.13□□□□□ -0.15
CLIP3-201ENST00000360535 SH3TC1Q8TE82 1336 aa14.13□□□□□ -0.15
CLIP3-201ENST00000360535 A0A0G2JS52 829 aa14.13□□□□□ -0.15
CLIP3-201ENST00000360535 FGAP02671 866 aa14.13□□□□□ -0.15
CLIP3-201ENST00000360535 GPTP24298 496 aa14.13□□□□□ -0.15
CLIP3-201ENST00000360535 IMMTQ16891 758 aaKnown RBP14.13□□□□□ -0.15
CLIP3-201ENST00000360535 TOM1L2Q6ZVM7 507 aa14.13□□□□□ -0.15
CLIP3-201ENST00000360535 ZNF215Q9UL58 517 aaPredicted RBP14.13□□□□□ -0.15
CLIP3-201ENST00000360535 CASP7P55210 303 aa14.13□□□□□ -0.15
CLIP3-201ENST00000360535 PUS7LQ9H0K6 701 aaKnown RBP14.13□□□□□ -0.15
CLIP3-201ENST00000360535 XAGE2Q96GT9 111 aa14.13□□□□□ -0.15
CLIP3-201ENST00000360535 XPO4Q9C0E2 1151 aaKnown RBP14.13□□□□□ -0.15
CLIP3-201ENST00000360535 NAT10Q9H0A0 1025 aaKnown RBP14.13□□□□□ -0.15
CLIP3-201ENST00000360535 H7C1W4 665 aa14.12□□□□□ -0.15
CLIP3-201ENST00000360535 FAM177A1Q8N128 213 aaPredicted RBP14.12□□□□□ -0.15
CLIP3-201ENST00000360535 CCDC82Q8N4S0 544 aa14.12□□□□□ -0.15
CLIP3-201ENST00000360535 STRN4Q9NRL3 753 aa14.12□□□□□ -0.15
CLIP3-201ENST00000360535 SPTLC2O15270 562 aa14.12□□□□□ -0.15
CLIP3-201ENST00000360535 SLC3A2P08195 630 aaKnown RBP14.12□□□□□ -0.15
CLIP3-201ENST00000360535 GOLGA8FQ08AF8 430 aa14.12□□□□□ -0.15
CLIP3-201ENST00000360535 GOLGA8DPQ0D2H9 430 aa14.12□□□□□ -0.15
CLIP3-201ENST00000360535 ENGASEQ8NFI3 743 aa14.12□□□□□ -0.15
CLIP3-201ENST00000360535 ANKRD7Q92527 254 aa14.12□□□□□ -0.15
CLIP3-201ENST00000360535 MYL10Q9BUA6 226 aa14.12□□□□□ -0.15
CLIP3-201ENST00000360535 JCADQ9P266 1359 aa14.12□□□□□ -0.15
CLIP3-201ENST00000360535 CTIFO43310 598 aaKnown RBP14.11□□□□□ -0.15
CLIP3-201ENST00000360535 IDH1O75874 414 aaKnown RBP14.11□□□□□ -0.15
CLIP3-201ENST00000360535 HOMER1Q86YM7 354 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 PHKBQ93100 1093 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 TMX1Q9H3N1 280 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 INCENPQ9NQS7 918 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 C5P01031 1676 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 ZNF213O14771 459 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 ATP2B1P20020 1258 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 MICU3Q86XE3 530 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 PAXBP1Q9Y5B6 917 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 KIF28PB7ZC32 967 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 SPECC1Q5M775 1068 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 FMR1NBQ8N0W7 255 aaPredicted RBP14.11□□□□□ -0.15
CLIP3-201ENST00000360535 MRFAP1L1Q96HT8 127 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 TOMM22Q9NS69 142 aa14.11□□□□□ -0.15
CLIP3-201ENST00000360535 CHD2O14647 1828 aaKnown RBP14.1□□□□□ -0.15
CLIP3-201ENST00000360535 ZNF202O95125 648 aa14.1□□□□□ -0.15
CLIP3-201ENST00000360535 ELF2Q15723 593 aa14.1□□□□□ -0.15
CLIP3-201ENST00000360535 ZNF771Q7L3S4 317 aaPredicted RBP14.1□□□□□ -0.15
CLIP3-201ENST00000360535 LINC00301Q8NCQ3 95 aa14.1□□□□□ -0.15
CLIP3-201ENST00000360535 ZNF274Q96GC6 653 aaPredicted RBP14.1□□□□□ -0.15
CLIP3-201ENST00000360535 KIAA1468Q9P260 1216 aa14.1□□□□□ -0.15
CLIP3-201ENST00000360535 AFDNP55196 1824 aaKnown RBP14.1□□□□□ -0.15
CLIP3-201ENST00000360535 CAVIN2O95810 425 aa14.1□□□□□ -0.15
CLIP3-201ENST00000360535 NFXL1Q6ZNB6 911 aa14.1□□□□□ -0.15
CLIP3-201ENST00000360535 CCZ1BP86790 482 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 CCZ1P86791 482 aaPredicted RBP14.09□□□□□ -0.15
CLIP3-201ENST00000360535 DMTNQ08495 405 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 ADALQ6DHV7 355 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 UBE2Q2LH0YL09 131 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 ATP1A3P13637 1013 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 TRDNQ13061 729 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 MYSM1Q5VVJ2 828 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 SYT10Q6XYQ8 523 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 HELBQ8NG08 1087 aaPredicted RBP14.09□□□□□ -0.15
CLIP3-201ENST00000360535 GPAA1O43292 621 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 METTL24Q5JXM2 366 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 CCAR2Q8N163 923 aaKnown RBP14.09□□□□□ -0.15
CLIP3-201ENST00000360535 CLIC6Q96NY7 704 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 C19orf44Q9H6X5 657 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 CTNNA3Q9UI47 895 aa14.09□□□□□ -0.15
CLIP3-201ENST00000360535 NCOA7Q8NI08 942 aa14.08□□□□□ -0.15
CLIP3-201ENST00000360535 KIF18AQ8NI77 898 aa14.08□□□□□ -0.15
CLIP3-201ENST00000360535 NKX2-3Q8TAU0 364 aa14.08□□□□□ -0.15
CLIP3-201ENST00000360535 RTEL1Q9NZ71 1219 aa14.08□□□□□ -0.15
CLIP3-201ENST00000360535 SERPINC1P01008 464 aa14.08□□□□□ -0.16
CLIP3-201ENST00000360535 SFPQP23246 707 aaKnown RBP eCLIP14.08□□□□□ -0.16
CLIP3-201ENST00000360535 RRP12Q5JTH9 1297 aaKnown RBP14.08□□□□□ -0.16
CLIP3-201ENST00000360535 SARM1Q6SZW1 724 aa14.08□□□□□ -0.16
CLIP3-201ENST00000360535 FBXO18Q8NFZ0 1043 aa14.08□□□□□ -0.16
CLIP3-201ENST00000360535 ALG1Q9BT22 464 aa14.08□□□□□ -0.16
CLIP3-201ENST00000360535 SENP2Q9HC62 589 aa14.08□□□□□ -0.16
CLIP3-201ENST00000360535 PRDM11Q9NQV5 511 aa14.08□□□□□ -0.16
CLIP3-201ENST00000360535 PFKFB1P16118 471 aa14.08□□□□□ -0.16
CLIP3-201ENST00000360535 SLC9C2Q5TAH2 1124 aa14.08□□□□□ -0.16
CLIP3-201ENST00000360535 ZBTB9Q96C00 473 aa14.08□□□□□ -0.16
CLIP3-201ENST00000360535 CNNM1Q9NRU3 951 aa14.08□□□□□ -0.16
CLIP3-201ENST00000360535 B4E1Z4 1266 aa14.07□□□□□ -0.16
CLIP3-201ENST00000360535 DHX16O60231 1041 aaKnown RBP14.07□□□□□ -0.16
CLIP3-201ENST00000360535 CDC25BP30305 580 aa14.07□□□□□ -0.16
CLIP3-201ENST00000360535 ANO1Q5XXA6 986 aa14.07□□□□□ -0.16
CLIP3-201ENST00000360535 NBPF11Q86T75 865 aa14.07□□□□□ -0.16
CLIP3-201ENST00000360535 ZCRB1Q8TBF4 217 aaKnown RBP14.07□□□□□ -0.16
CLIP3-201ENST00000360535 WDHD1O75717 1129 aaPredicted RBP14.07□□□□□ -0.16
CLIP3-201ENST00000360535 ANTXR2P58335 489 aa14.07□□□□□ -0.16
CLIP3-201ENST00000360535 IFIT5Q13325 482 aaKnown RBP14.07□□□□□ -0.16
CLIP3-201ENST00000360535 PNOCQ13519 176 aa14.07□□□□□ -0.16
CLIP3-201ENST00000360535 LDHAL6AQ6ZMR3 332 aa14.07□□□□□ -0.16
CLIP3-201ENST00000360535 KCNG4Q8TDN1 519 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms