RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 DSCC1Q9BVC3 393 aa11.19□□□□□ -0.62
HOXA1-201ENST00000343060 LRRC2Q9BYS8 371 aa11.19□□□□□ -0.62
HOXA1-201ENST00000343060 ATG3Q9NT62 314 aa11.19□□□□□ -0.62
HOXA1-201ENST00000343060 TUBE1Q9UJT0 475 aa11.19□□□□□ -0.62
HOXA1-201ENST00000343060 MRFAP1Q9Y605 127 aa11.19□□□□□ -0.62
HOXA1-201ENST00000343060 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.18□□□□□ -0.62
HOXA1-201ENST00000343060 BTBD11A6QL63 1104 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 ARHGAP6O43182 974 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 FDPSP14324 419 aaKnown RBP11.18□□□□□ -0.62
HOXA1-201ENST00000343060 AKAP4Q5JQC9 854 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 KRBA2Q6ZNG9 492 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 CCDC129Q6ZRS4 1044 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 GOLGA5Q8TBA6 731 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 RABGGTAQ92696 567 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 HAUS7Q99871 368 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 FUT8Q9BYC5 575 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 EFCC1Q9HA90 598 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 COPRSQ9NQ92 184 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 PDIA3P30101 505 aaKnown RBP11.18□□□□□ -0.62
HOXA1-201ENST00000343060 FOSBP53539 338 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 ZSCAN26Q16670 478 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 AXDND1Q5T1B0 1012 aaPredicted RBP11.18□□□□□ -0.62
HOXA1-201ENST00000343060 JAKMIP3Q5VZ66 844 aa11.18□□□□□ -0.62
HOXA1-201ENST00000343060 SEC62Q99442 399 aaKnown RBP11.18□□□□□ -0.62
HOXA1-201ENST00000343060 MAP2K7O14733 419 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 SPTLC2O15270 562 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 ZNF202O95125 648 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 CMA1P23946 247 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 TNNI3KQ59H18 835 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 BRAPQ7Z569 592 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 USHBP1Q8N6Y0 703 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 FBXO18Q8NFZ0 1043 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 FBXW7Q969H0 707 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 KIFC2Q96AC6 838 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 RASSF4Q9H2L5 321 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 ARFGAP3Q9NP61 516 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 PPP2R2CQ9Y2T4 447 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 FPGT-TNNI3KV9GXZ4 949 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 IGKV5-2P06315 115 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 ATP1A3P13637 1013 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 RFX5P48382 616 aaPredicted RBP11.17□□□□□ -0.62
HOXA1-201ENST00000343060 MYL5Q02045 173 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 PPP2R3AQ06190 1150 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 TEFQ10587 303 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 TBX2Q13207 712 aaPredicted RBP11.17□□□□□ -0.62
HOXA1-201ENST00000343060 STK38Q15208 465 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 AK7Q96M32 723 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 SIL1Q9H173 461 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 CWC15Q9P013 229 aaKnown RBP11.17□□□□□ -0.62
HOXA1-201ENST00000343060 CLIC4Q9Y696 253 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 PXDNQ92626 1479 aa11.17□□□□□ -0.62
HOXA1-201ENST00000343060 FAM237AA0A1B0GTK4 181 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 CCDC151A5D8V7 595 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 DDX58O95786 925 aaKnown RBP11.16□□□□□ -0.62
HOXA1-201ENST00000343060 LMOD1P29536 600 aaPredicted RBP11.16□□□□□ -0.62
HOXA1-201ENST00000343060 MYSM1Q5VVJ2 828 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 KBTBD3Q8NAB2 608 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 DPF2Q92785 391 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 NCOA5Q9HCD5 579 aaKnown RBP11.16□□□□□ -0.62
HOXA1-201ENST00000343060 HELLSQ9NRZ9 838 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 SPEF2Q9C093 1822 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 MROH7-TTC4A0A0A0MT08 1334 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 RGPD2P0DJD1 1756 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 PFKFB1P16118 471 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 UBASH3AP57075 661 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 CCT2P78371 535 aaKnown RBP11.16□□□□□ -0.62
HOXA1-201ENST00000343060 GUCY1B3Q02153 619 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 BRD3Q15059 726 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 IP6K1Q92551 441 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 TRERF1Q96PN7 1200 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 UTP14AQ9BVJ6 771 aaKnown RBP11.16□□□□□ -0.62
HOXA1-201ENST00000343060 DDX21Q9NR30 783 aaKnown RBP eCLIP11.16□□□□□ -0.62
HOXA1-201ENST00000343060 HPSEQ9Y251 543 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 CAMTA1Q9Y6Y1 1673 aa11.16□□□□□ -0.62
HOXA1-201ENST00000343060 MYO1CO00159 1063 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 RNMTO43148 476 aaKnown RBP11.15□□□□□ -0.62
HOXA1-201ENST00000343060 RPS6KA5O75582 802 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 CASQ1P31415 396 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 CCDC191Q8NCU4 936 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 HNRNPLLQ8WVV9 542 aaKnown RBP11.15□□□□□ -0.62
HOXA1-201ENST00000343060 LTV1Q96GA3 475 aaPredicted RBP11.15□□□□□ -0.62
HOXA1-201ENST00000343060 WDR24Q96S15 920 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 PARD6BQ9BYG5 372 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 ZCCHC17Q9NP64 241 aaKnown RBP11.15□□□□□ -0.62
HOXA1-201ENST00000343060 E7EWF7 191 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 BIN1O00499 593 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 CHGBP05060 677 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 PDIA6Q15084 440 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 SF3A1Q15459 793 aaKnown RBP11.15□□□□□ -0.62
HOXA1-201ENST00000343060 EPHA10Q5JZY3 1008 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 SRLQ86TD4 932 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 KLHDC4Q8TBB5 520 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 GOLGA1Q92805 767 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 INTS13Q9NVM9 706 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 C4AP0C0L4 1744 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 C4BP0C0L5 1744 aa11.15□□□□□ -0.62
HOXA1-201ENST00000343060 NEURL1BA8MQ27 555 aa11.14□□□□□ -0.63
HOXA1-201ENST00000343060 H3BQF6 201 aa11.14□□□□□ -0.63
HOXA1-201ENST00000343060 TOP1P11387 765 aaKnown RBP11.14□□□□□ -0.63
HOXA1-201ENST00000343060 TXLNAP40222 546 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms