RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Taf4bG5E8Z2 855 aa18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Eef1dP57776 281 aaKnown RBP18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Cep63Q3UPP8 700 aa18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Gbp9Q8BTS3 619 aa18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Nkx1-2P42580 305 aa18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Ripply1Q2WG77 201 aa18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Ppfia2Q8BSS9 1257 aa18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Atp6v0a4Q920R6 833 aa18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Ppp1r9aH3BJD6 1292 aa18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Ppp2r5eQ61151 467 aa18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 NapgQ9CWZ7 312 aa18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Ccdc7Q9D541 371 aa18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Ddx27Q921N6 760 aaKnown RBP18.61■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Zkscan5Q9Z1D8 819 aa18.6■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Gsta4P24472 222 aa18.6■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Fbln2P37889 1221 aa18.6■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Cage1Q5IR70 849 aa18.6■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Trak2Q6P9N8 913 aa18.6■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Ankrd49Q8VE42 238 aa18.6■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Cpsf2O35218 782 aaKnown RBP18.6■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Aldh1l2Q8K009 923 aa18.6■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Ccdc113Q8C5T8 377 aa18.6■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Vps52Q8C754 723 aaKnown RBP18.59■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Ncf1Q09014 390 aa18.59■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Map3k11Q80XI6 850 aa18.59■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Golga5Q9QYE6 729 aa18.59■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Esyt1Q3U7R1 1092 aaKnown RBP18.59■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Pcdhb2Q91Y00 799 aa18.59■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Ano1Q8BHY3 960 aa18.59■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Tcp11l1Q8BTG3 509 aa18.59■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Trove2O08848 538 aa18.59■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Sox13Q04891 613 aa18.59■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Ankrd40Q5SUE8 363 aa18.59■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Mast1Q9R1L5 1570 aa18.59■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Synpo2Q91YE8 1087 aaKnown RBP18.58■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Homer2Q9QWW1 354 aa18.58■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Pet2A2AHY8 747 aa18.58■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Gm5934D3Z4U6 212 aa18.58■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Zswim4Q8C7B8 1101 aa18.58■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Pbrm1Q8BSQ9 1634 aaKnown RBP18.58■□□□□ 0.57
Ccdc88a-201ENSMUST00000040182 Rbm8a2A0A0N4SUH6 174 aa18.58■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Becn2P0DM65 447 aa18.58■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Rbm8aQ9CWZ3 174 aa18.58■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Gm2030D3Z7C4 212 aa18.58■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Grm8P47743 908 aa18.58■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Ndufab1Q9CR21 156 aa18.58■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Ccne1Q61457 408 aa18.58■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Mrpl12Q9DB15 201 aaKnown RBP18.58■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Stmn1P54227 149 aaKnown RBP18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Rab34Q64008 259 aa18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Ccdc28aQ8CEI3 192 aa18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Nedd9O35177 833 aa18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Hand2Q61039 217 aa18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Swap70Q6A028 585 aaKnown RBP18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 VimP20152 466 aaKnown RBP18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Dydc2Q9D3X8 139 aa18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Exoc3Q6KAR6 755 aa18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Zrsr1Q64707 428 aa18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Ccdc25Q78PG9 208 aa18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 HomezQ80W88 542 aa18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Nup62clA2AG10 272 aa18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Hexim1Q8R409 356 aaKnown RBP18.57■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Cracr2aQ3UP38 310 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Lin9Q8C735 542 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Thoc2B1AZI6 1594 aaKnown RBP18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Atp2a3Q64518 1038 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Gimap8Q75N62 688 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Astn2Q80Z10 1352 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Grin2aP35436 1464 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Gm6583E9Q8Z1 469 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Kif11Q6P9P6 1052 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Cabp5Q9JLK3 173 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Acot9Q9R0X4 439 aaKnown RBP18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Lrrc74aA0A1Y7VMD6 494 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Capza3P70190 299 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Trim27Q62158 513 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Kdm5bQ80Y84 1544 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Rufy3Q9D394 469 aa18.56■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Nop2Q922K7 793 aaKnown RBP18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Tbc1d4Q8BYJ6 1307 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Klhl20Q8VCK5 604 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 HnrnpcQ9Z204 313 aaKnown RBP18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Rrp1P56183 494 aaKnown RBP18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Ctnna3Q65CL1 895 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Retreg2Q6NS82 541 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Ccdc105Q9D4K7 499 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Plekhg2Q6KAU7 1340 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Atp2b3Q0VF55 1220 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Ncaph2Q8BSP2 607 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Bbs5Q9CZQ9 341 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Sbno1Q689Z5 1390 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Capn2O08529 700 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Traf1P39428 409 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 ArsiQ32KI9 573 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 SarnpQ9D1J3 210 aaKnown RBP18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Brd1E9PZ26 1189 aaKnown RBP18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Gipc1Q9Z0G0 333 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Chpf2Q3UU43 768 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Ift122Q6NWV3 1182 aa18.55■□□□□ 0.56
Ccdc88a-201ENSMUST00000040182 Zfp251Q6PCX8 632 aa18.55■□□□□ 0.56
Retrieved 100 of 22,080 RNA–protein pairs in 57.9 ms