RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SULT1A1P50225 295 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 RSPO1Q2MKA7 263 aaPredicted RBP13.26□□□□□ -0.29
UPF1-204ENST00000596842 C10orf91Q5T1B1 145 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 RP1L1Q8IWN7 2480 aaPredicted RBP13.26□□□□□ -0.29
UPF1-204ENST00000596842 SLC35G3Q8N808 338 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 OR10AD1Q8NGE0 317 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 OR14L1PQ8NHC6 308 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 C19orf25Q9UFG5 118 aaPredicted RBP13.26□□□□□ -0.29
UPF1-204ENST00000596842 ZDHHC8Q9ULC8 765 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 HDGFL3Q9Y3E1 203 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 NSG1A0A0A6YYJ2 146 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 A0A1W2PQM1 296 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 NPIPB13A6NJU9 1138 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 NPIPB4C9JG80 1138 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 NRASP01111 189 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 SNCAP37840 140 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 VAMP2P63027 116 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 SRYQ05066 204 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 UNQ6494/PRO21346Q6UXR6 183 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 SLC25A26Q70HW3 274 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 Q96M66 194 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 IGHV3-64DA0A0J9YX35 117 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 ZNF587BE7ETH6 402 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 AADACP22760 399 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 RUNX1Q01196 453 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 RABEPKQ7Z6M1 372 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 ZNF695Q8IW36 515 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 PRR18Q8N4B5 295 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 UBALD1Q8TB05 177 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 VPS25Q9BRG1 176 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 KLF2Q9Y5W3 355 aaPredicted RBP13.25□□□□□ -0.29
UPF1-204ENST00000596842 COL6A3P12111 3177 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 SVILO95425 2214 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 GPR179Q6PRD1 2367 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 NKX2-6A6NCS4 301 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 HSD17B6O14756 317 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 ZNF133P52736 654 aaPredicted RBP13.25□□□□□ -0.29
UPF1-204ENST00000596842 RPS18P62269 152 aaKnown RBP13.25□□□□□ -0.29
UPF1-204ENST00000596842 HIST2H3PS2Q5TEC6 136 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 REC114Q7Z4M0 266 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 A0A0J9YW62 118 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 C5orf52A6NGY3 159 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 TAGLN2P37802 199 aaKnown RBP13.25□□□□□ -0.29
UPF1-204ENST00000596842 ZNF468Q5VIY5 522 aaPredicted RBP13.25□□□□□ -0.29
UPF1-204ENST00000596842 CRIP3Q6Q6R5 217 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 NAT6Q93015 286 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 SYT3Q9BQG1 590 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 NUDT16L1Q9BRJ7 211 aaKnown RBP13.25□□□□□ -0.29
UPF1-204ENST00000596842 ZNF286AQ9HBT8 521 aa13.25□□□□□ -0.29
UPF1-204ENST00000596842 CFIP05156 583 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 CCL20P78556 96 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 HGFACQ04756 655 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 MALLQ13021 153 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 IL15RAQ13261 267 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 THNSL2Q86YJ6 484 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 C15orf54Q8N8G6 183 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 TP53RKQ96S44 253 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 PLEKHA2Q9HB19 425 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 MSTNO14793 375 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 COX5BP10606 129 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 SRFP11831 508 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 NPBWR2P48146 333 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 IDH3GP51553 393 aaPredicted RBP13.24□□□□□ -0.29
UPF1-204ENST00000596842 UBE2KP61086 200 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 LGI3Q8N145 548 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 GPR137CQ8N3F9 429 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 CHRNA10Q9GZZ6 450 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 A0A096LPE4 126 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 A0A1W2PPZ6 126 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 CXCL13O43927 109 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 ARL6IP1Q15041 203 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 SLC16A14Q7RTX9 510 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 OSR2Q8N2R0 312 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 CPNE4Q96A23 557 aaPredicted RBP13.24□□□□□ -0.29
UPF1-204ENST00000596842 DOK5Q9P104 306 aa13.24□□□□□ -0.29
UPF1-204ENST00000596842 CHCHD2Q9Y6H1 151 aaPredicted RBP13.24□□□□□ -0.29
UPF1-204ENST00000596842 HNF1AP20823 631 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 TMEM187Q14656 261 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 IZUMO4Q1ZYL8 232 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 GFI1BQ5VTD9 330 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 ZNF343Q6P1L6 599 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 PBDC1Q9BVG4 233 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 IGKV1-12A0A0C4DH73 117 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 CEACAM18A8MTB9 384 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 AQP7O14520 342 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 IGKV1D-12P01611 117 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 LYL1P12980 280 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 CCL1P22362 96 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 LSM6P62312 80 aaKnown RBP13.23□□□□□ -0.29
UPF1-204ENST00000596842 CXorf66Q5JRM2 361 aaPredicted RBP13.23□□□□□ -0.29
UPF1-204ENST00000596842 SRXN1Q9BYN0 137 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 RIMS4Q9H426 269 aaPredicted RBP13.23□□□□□ -0.29
UPF1-204ENST00000596842 CBLN4Q9NTU7 201 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 LIPGQ9Y5X9 500 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 IGHV5-10-1A0A0J9YXX1 117 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 A6NNC1 897 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 HEXAP06865 529 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 OR8U8P0C7N1 319 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 PAX6P26367 422 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 FAM3AP98173 230 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms