RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 PHF1O43189 567 aaPredicted RBP14.18□□□□□ -0.14
NUP88-210ENST00000574867 FCN3O75636 299 aa14.18□□□□□ -0.14
NUP88-210ENST00000574867 CSN2P05814 226 aa14.18□□□□□ -0.14
NUP88-210ENST00000574867 CD99P14209 185 aa14.18□□□□□ -0.14
NUP88-210ENST00000574867 NDUFB7P17568 137 aa14.18□□□□□ -0.14
NUP88-210ENST00000574867 KCNJ3P48549 501 aa14.18□□□□□ -0.14
NUP88-210ENST00000574867 PDCD1Q15116 288 aa14.18□□□□□ -0.14
NUP88-210ENST00000574867 PAN3Q58A45 887 aaKnown RBP14.18□□□□□ -0.14
NUP88-210ENST00000574867 OR56B1Q8NGI3 324 aa14.18□□□□□ -0.14
NUP88-210ENST00000574867 ACOT12Q8WYK0 555 aa14.18□□□□□ -0.14
NUP88-210ENST00000574867 CCDC59Q9P031 241 aaKnown RBP14.18□□□□□ -0.14
NUP88-210ENST00000574867 SPATA2Q9UM82 520 aa14.18□□□□□ -0.14
NUP88-210ENST00000574867 MAST4O15021 2626 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 METTL21EPA6NDL7 271 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 MGST3O14880 152 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 PAHP00439 452 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 INHBBP09529 407 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 ZNF182P17025 639 aaPredicted RBP14.17□□□□□ -0.14
NUP88-210ENST00000574867 OR3A1P47881 315 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 LCN2P80188 198 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 GRK1Q15835 563 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 ATAD3CQ5T2N8 411 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 CYB5R2Q6BCY4 276 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 FAM89BQ8N5H3 189 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 DYNC2LI1Q8TCX1 351 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 NICN1Q9BSH3 213 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 SHARPINQ9H0F6 387 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 DOCK11Q5JSL3 2073 aa14.17□□□□□ -0.14
NUP88-210ENST00000574867 TRBV23-1A0A0A0MS06 115 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 PPIAL4CA0A0B4J2A2 164 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 PDCD6O75340 191 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 SCGNO76038 276 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 GLAP06280 429 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 FUT3P21217 361 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 ZFP36P26651 326 aaKnown RBP14.16□□□□□ -0.14
NUP88-210ENST00000574867 GDPD3Q7L5L3 318 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 SUMF2Q8NBJ7 301 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 MSI2Q96DH6 328 aaKnown RBP14.16□□□□□ -0.14
NUP88-210ENST00000574867 NEDD4LQ96PU5 975 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 DPCDQ9BVM2 203 aaPredicted RBP14.16□□□□□ -0.14
NUP88-210ENST00000574867 CHST6Q9GZX3 395 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 PPA2Q9H2U2 334 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 MALRD1Q5VYJ5 2156 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.16□□□□□ -0.143e-8■■■■■ 27.2
NUP88-210ENST00000574867 LOC105371242A0A075B767 164 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 TRAV20A0A0B4J274 112 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 EFNB2P52799 333 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 RBM39Q14498 530 aaKnown RBP14.16□□□□□ -0.14
NUP88-210ENST00000574867 RAB12Q6IQ22 244 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 BTN2A1Q7KYR7 527 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 OR4S1Q8NGB4 309 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 DGCR14Q96DF8 476 aaKnown RBP14.16□□□□□ -0.14
NUP88-210ENST00000574867 DCTN5Q9BTE1 182 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 LPAR2Q9HBW0 351 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 RHBDL2Q9NX52 303 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 ZNF581Q9P0T4 197 aa14.16□□□□□ -0.14
NUP88-210ENST00000574867 A0A0A6YYD4 124 aa14.15□□□□□ -0.14
NUP88-210ENST00000574867 FUOMA2VDF0 154 aa14.15□□□□□ -0.14
NUP88-210ENST00000574867 PAX5Q02548 391 aa14.15□□□□□ -0.14
NUP88-210ENST00000574867 PLA2G7Q13093 441 aa14.15□□□□□ -0.14
NUP88-210ENST00000574867 SIGIRRQ6IA17 410 aa14.15□□□□□ -0.14
NUP88-210ENST00000574867 GLCCI1Q86VQ1 547 aa14.15□□□□□ -0.14
NUP88-210ENST00000574867 FGFRL1Q8N441 504 aa14.15□□□□□ -0.14
NUP88-210ENST00000574867 H1FXQ92522 213 aaKnown RBP14.15□□□□□ -0.14
NUP88-210ENST00000574867 DMRTB1Q96MA1 342 aa14.15□□□□□ -0.14
NUP88-210ENST00000574867 LPAR3Q9UBY5 353 aa14.15□□□□□ -0.14
NUP88-210ENST00000574867 C22orf46C9J442 243 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 MCRIP1C9JLW8 97 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 HSPB6O14558 160 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 ENSAO43768 121 aaKnown RBP14.14□□□□□ -0.15
NUP88-210ENST00000574867 ZNF16P17020 682 aaPredicted RBP14.14□□□□□ -0.15
NUP88-210ENST00000574867 CHATP28329 748 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 ERP29P30040 261 aaKnown RBP14.14□□□□□ -0.15
NUP88-210ENST00000574867 VEGFCP49767 419 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 DVL1P1P54792 670 aaPredicted RBP14.14□□□□□ -0.15
NUP88-210ENST00000574867 MZT2AQ6P582 158 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 OR5H6Q8NGV6 325 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 C8orf46Q8TAG6 207 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 NEK7Q8TDX7 302 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 BATF3Q9NR55 127 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 RPUSD1Q9UJJ7 312 aaKnown RBP14.14□□□□□ -0.15
NUP88-210ENST00000574867 PEX16Q9Y5Y5 336 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 FOXI3A8MTJ6 420 aaPredicted RBP14.14□□□□□ -0.15
NUP88-210ENST00000574867 GATA3P23771 443 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 BLVRBP30043 206 aaPredicted RBP14.14□□□□□ -0.15
NUP88-210ENST00000574867 P2RX3P56373 397 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 EDDM3BP56851 147 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 EDDM3AQ14507 147 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 ATXN7L3Q14CW9 347 aaPredicted RBP14.14□□□□□ -0.15
NUP88-210ENST00000574867 UBE2NLQ5JXB2 153 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 NKAPLQ5M9Q1 402 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 RAB40AQ8WXH6 277 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 TMEM186Q96B77 213 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 SLC25A38Q96DW6 304 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 CMTM3Q96MX0 182 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 ATG5Q9H1Y0 275 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 HSF4Q9ULV5 492 aa14.14□□□□□ -0.15
NUP88-210ENST00000574867 IGHV2-70DA0A0C4DH43 119 aa14.13□□□□□ -0.15
NUP88-210ENST00000574867 CD5LO43866 347 aa14.13□□□□□ -0.15
NUP88-210ENST00000574867 CA11O75493 328 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms