RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 SNAPC5O75971 98 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 CYCSP99999 105 aaKnown RBP9.08□□□□□ -0.96
CUX1-217ENST00000558836 MEX3BQ6ZN04 569 aaKnown RBP9.08□□□□□ -0.96
CUX1-217ENST00000558836 MKXQ8IYA7 352 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 SECTM1Q8WVN6 248 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 TMED6Q8WW62 240 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 OR5P3Q8WZ94 311 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 SMIM3Q9BZL3 60 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 ZC4H2Q9NQZ6 224 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 SS18L1O75177 396 aaPredicted RBP9.08□□□□□ -0.96
CUX1-217ENST00000558836 TSPAN9O75954 239 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 CST4P01036 141 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 COX5BP10606 129 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 RCC1P18754 421 aaPredicted RBP9.08□□□□□ -0.96
CUX1-217ENST00000558836 FGF12P61328 243 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 SURF2Q15527 256 aaPredicted RBP9.08□□□□□ -0.96
CUX1-217ENST00000558836 SPIN3Q5JUX0 258 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 CXorf67Q86X51 503 aaPredicted RBP9.08□□□□□ -0.96
CUX1-217ENST00000558836 PRR18Q8N4B5 295 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 TECTBQ96PL2 329 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 RASL12Q9NYN1 266 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 ATPIF1Q9UII2 106 aa9.08□□□□□ -0.96
CUX1-217ENST00000558836 SLC33A1O00400 549 aaPredicted RBP9.07□□□□□ -0.96
CUX1-217ENST00000558836 PHF1O43189 567 aaPredicted RBP9.07□□□□□ -0.96
CUX1-217ENST00000558836 UBE2NP61088 152 aaKnown RBP9.07□□□□□ -0.96
CUX1-217ENST00000558836 SNTB1Q13884 538 aaKnown RBP9.07□□□□□ -0.96
CUX1-217ENST00000558836 ZNF585AQ6P3V2 769 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 TFAP2EQ6VUC0 442 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 C9orf106Q8NAJ2 232 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 ANGPTL6Q8NI99 470 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 PIK3IP1Q96FE7 263 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 TNFSF12O43508 249 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 PPYP01298 95 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 PRSS54Q6PEW0 395 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 OR5A2Q8NGI9 324 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 LHFPL5Q8TAF8 219 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 GMPPAQ96IJ6 420 aaPredicted RBP9.07□□□□□ -0.96
CUX1-217ENST00000558836 TAAR6Q96RI8 345 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 NAA60Q9H7X0 242 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 PCDHB16Q9NRJ7 776 aa9.07□□□□□ -0.96
CUX1-217ENST00000558836 MEX3AA1L020 520 aaKnown RBP9.06□□□□□ -0.96
CUX1-217ENST00000558836 H0YL77 283 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 SHOXO15266 292 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 LRP3O75074 770 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 ZNF14P17017 642 aaPredicted RBP9.06□□□□□ -0.96
CUX1-217ENST00000558836 HERV-K104P61576 105 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 B2MP61769 119 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 TCF15Q12870 199 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 HERPUD1Q15011 391 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 TBC1D28Q2M2D7 210 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 TMEM211Q6ICI0 200 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 FAM214BQ7L5A3 538 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 WDR86Q86TI4 376 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 SUMF2Q8NBJ7 301 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 GLYATL2Q8WU03 294 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 RBM14Q96PK6 669 aaKnown RBP9.06□□□□□ -0.96
CUX1-217ENST00000558836 TP53RKQ96S44 253 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 DHRS9Q9BPW9 319 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 CYTL1Q9NRR1 136 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 DECR2Q9NUI1 292 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 TAS2R3Q9NYW6 316 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 KCNIP3Q9Y2W7 256 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 PTPRBP23467 1997 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 PLCE1Q9P212 2302 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 TUBAL3A6NHL2 446 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 CDIPTO14735 213 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 GRPP07492 148 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 ZNF44P15621 663 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 GNRHRP30968 328 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 GLP1RP43220 463 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 IL15RAQ13261 267 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 TMEM187Q14656 261 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 PAN3Q58A45 887 aaKnown RBP9.06□□□□□ -0.96
CUX1-217ENST00000558836 OR52M1Q8NGK5 317 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 IL1F10Q8WWZ1 152 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 NARS2Q96I59 477 aaKnown RBP9.06□□□□□ -0.96
CUX1-217ENST00000558836 ASF1BQ9NVP2 202 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 TRBV6-7A0A0A0MS04 114 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 IGKV1D-13A0A0B4J2D9 117 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 IGKV1-6A0A0C4DH72 117 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 HSD17B6O14756 317 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 TM4SF5O14894 197 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 NUPL2O15504 423 aaKnown RBP9.06□□□□□ -0.96
CUX1-217ENST00000558836 NXPH3O95157 252 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 TFF1P04155 84 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 IGKV1-13P0DP09 117 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 NUP62P37198 522 aaPredicted RBP9.06□□□□□ -0.96
CUX1-217ENST00000558836 RPL7L1Q6DKI1 246 aaKnown RBP9.06□□□□□ -0.96
CUX1-217ENST00000558836 BVESQ8NE79 360 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 OR1S2Q8NGQ3 325 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 OR1J1Q8NGS3 322 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 SLC25A40Q8TBP6 338 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 NANOS1Q8WY41 292 aaKnown RBP9.06□□□□□ -0.96
CUX1-217ENST00000558836 MOB3AQ96BX8 217 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 CLCF1Q9UBD9 225 aa9.06□□□□□ -0.96
CUX1-217ENST00000558836 TRAV24A0A0B4J272 114 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 SIRPB1O00241 398 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 SMPD2O60906 423 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 IFNA21P01568 189 aa9.05□□□□□ -0.96
CUX1-217ENST00000558836 CD82P27701 267 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms