RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ZNF256Q9Y2P7 627 aaPredicted RBP12.02□□□□□ -0.49
MCF2L-228ENST00000487354 PLECQ15149 4684 aaKnown RBP12.02□□□□□ -0.49
MCF2L-228ENST00000487354 SEC14L6B5MCN3 397 aa12.01□□□□□ -0.49
MCF2L-228ENST00000487354 CST1P01037 141 aa12.01□□□□□ -0.49
MCF2L-228ENST00000487354 CSN2P05814 226 aa12.01□□□□□ -0.49
MCF2L-228ENST00000487354 TMEM11P17152 192 aa12.01□□□□□ -0.49
MCF2L-228ENST00000487354 PRKACGP22612 351 aa12.01□□□□□ -0.49
MCF2L-228ENST00000487354 CFHR3Q02985 330 aa12.01□□□□□ -0.49
MCF2L-228ENST00000487354 KIR2DS1Q14954 304 aa12.01□□□□□ -0.49
MCF2L-228ENST00000487354 COMMD4Q9H0A8 199 aa12.01□□□□□ -0.49
MCF2L-228ENST00000487354 PLEKHA1Q9HB21 404 aa12.01□□□□□ -0.49
MCF2L-228ENST00000487354 TOR1AO14656 332 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 SYT7O43581 403 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 GATBO75879 557 aaKnown RBP12□□□□□ -0.49
MCF2L-228ENST00000487354 RPP14O95059 124 aaKnown RBP12□□□□□ -0.49
MCF2L-228ENST00000487354 POU3F4P49335 361 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 PRRX1P54821 245 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 SLC35B1P78383 322 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 EFNB1P98172 346 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 TRIM25Q14258 630 aaKnown RBP12□□□□□ -0.49
MCF2L-228ENST00000487354 HNF4GQ14541 408 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 ASPHD1Q5U4P2 390 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 AADACL4Q5VUY2 407 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 Q6P435 159 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 PRSS35Q8N3Z0 413 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 Q8N6K4 173 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 DNAAF1Q8NEP3 725 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 OR9G1Q8NH87 305 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 LEAP2Q969E1 77 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 RPEQ96AT9 228 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 ADAT3Q96EY9 351 aaPredicted RBP12□□□□□ -0.49
MCF2L-228ENST00000487354 KRTAP17-1Q9BYP8 105 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 EXOSC4Q9NPD3 245 aaKnown RBP12□□□□□ -0.49
MCF2L-228ENST00000487354 CLN6Q9NWW5 311 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 GSTK1Q9Y2Q3 226 aa12□□□□□ -0.49
MCF2L-228ENST00000487354 ZNF729A6NN14 1252 aaPredicted RBP11.99□□□□□ -0.49
MCF2L-228ENST00000487354 J3QR06 171 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 SLC33A1O00400 549 aaPredicted RBP11.99□□□□□ -0.49
MCF2L-228ENST00000487354 IGKV1D-33P01593 117 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 IGKV1-33P01594 117 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 IGHV3-7P01780 117 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 LYL1P12980 280 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 KIR3DL2P43630 455 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 GPR12P47775 334 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 CDX1P47902 265 aaPredicted RBP11.99□□□□□ -0.49
MCF2L-228ENST00000487354 EBI3Q14213 229 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 KPNB1Q14974 876 aaKnown RBP11.99□□□□□ -0.49
MCF2L-228ENST00000487354 TEX38Q6PEX7 206 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 MEPCEQ7L2J0 689 aaKnown RBP11.99□□□□□ -0.49
MCF2L-228ENST00000487354 OR4D6Q8NGJ1 314 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 MNTQ99583 582 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 PCDHB16Q9NRJ7 776 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 NDE1Q9NXR1 346 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 SMAD5-AS1Q9Y6J3 95 aa11.99□□□□□ -0.49
MCF2L-228ENST00000487354 KBTBD11-OT1A0A1B0GTJ5 212 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 LOC107986453A0A1B0GWG9 222 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 KDM4BO94953 1096 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 NFYBP25208 207 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 RBP2P50120 134 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 CRISP1P54107 249 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 PDZK1IP1Q13113 114 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 FOXE3Q13461 319 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 HES1Q14469 280 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 ATXN7L3Q14CW9 347 aaPredicted RBP11.98□□□□□ -0.49
MCF2L-228ENST00000487354 PNLIPRP3Q17RR3 467 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 ZNF260Q3ZCT1 412 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 KRBOX4Q5JUW0 171 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 FOXRED2Q8IWF2 684 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 OR13A1Q8NGR1 328 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 MYOZ3Q8TDC0 251 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 FAM107BQ9H098 131 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 LINC00574Q9H8X3 128 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 ING3Q9NXR8 418 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 PSG11Q9UQ72 335 aa11.98□□□□□ -0.49
MCF2L-228ENST00000487354 ZNF670-ZNF695F2Z2N8 137 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 AP4M1O00189 453 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 CCRL2O00421 344 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 SH2D1BO14796 132 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 ATP1B3P54709 279 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 ISL1P61371 349 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 CBX1P83916 185 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 CDK5R1Q15078 307 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 OVCH2Q7RTZ1 564 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 RDH10Q8IZV5 341 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 OR8H3Q8N146 312 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 YIPF7Q8N8F6 280 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 Q8N9W7 124 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 CANT1Q8WVQ1 401 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 C4orf3Q8WVX3 66 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 RFT1Q96AA3 541 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 RBMXL1Q96E39 390 aaKnown RBP11.97□□□□□ -0.49
MCF2L-228ENST00000487354 ABCG5Q9H222 651 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 ZNF556Q9HAH1 456 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 GLS2Q9UI32 602 aa11.97□□□□□ -0.49
MCF2L-228ENST00000487354 AMMECR1Q9Y4X0 333 aaPredicted RBP11.97□□□□□ -0.49
MCF2L-228ENST00000487354 A0A1W2PQL4 384 aaPredicted RBP11.96□□□□□ -0.49
MCF2L-228ENST00000487354 FUOMA2VDF0 154 aa11.96□□□□□ -0.49
MCF2L-228ENST00000487354 FRMD6-AS1P0C7T7 363 aa11.96□□□□□ -0.49
MCF2L-228ENST00000487354 ANXA8P13928 327 aa11.96□□□□□ -0.49
MCF2L-228ENST00000487354 ATF1P18846 271 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms