RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 FAM185AQ8N0U4 392 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 CPEB3Q8NE35 698 aaKnown RBP11.01□□□□□ -0.65
LINC00540-203ENST00000631321 ABHD3Q8WU67 409 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 HPSE2Q8WWQ2 592 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 SCRT1Q9BWW7 348 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 LINC00470Q9BZP3 86 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 SAV1Q9H4B6 383 aaPredicted RBP11.01□□□□□ -0.65
LINC00540-203ENST00000631321 C11orf1Q9H5F2 150 aa11.01□□□□□ -0.65
LINC00540-203ENST00000631321 CFAP54Q96N23 3096 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 PQLC2LA1A4F0 135 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 MEX3AA1L020 520 aaKnown RBP11□□□□□ -0.65
LINC00540-203ENST00000631321 PINLYPA6NC86 204 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 CCDC85CA6NKD9 419 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 PRSS44E7EML9 344 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 LINC01387J3KSC0 135 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 AGPAT2O15120 278 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 ST8SIA3O43173 380 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 DIRAS3O95661 229 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 NFYBP25208 207 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 HOXA1P49639 335 aaPredicted RBP11□□□□□ -0.65
LINC00540-203ENST00000631321 RAB13P51153 203 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 SRPXP78539 464 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 SSPNQ14714 243 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 SAXO1Q8IYX7 474 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 ZNF611Q8N823 705 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 KDF1Q8NAX2 398 aaPredicted RBP11□□□□□ -0.65
LINC00540-203ENST00000631321 OR52M1Q8NGK5 317 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 OR11L1Q8NGX0 322 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 SLC39A7Q92504 469 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 ZNF845Q96IR2 970 aaPredicted RBP11□□□□□ -0.65
LINC00540-203ENST00000631321 CACFD1Q9UGQ2 172 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 KPTNQ9Y664 436 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 RPL36A-HNRNPH2H7BZ11 118 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 MPPED1O15442 326 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 PHF1O43189 567 aaPredicted RBP11□□□□□ -0.65
LINC00540-203ENST00000631321 PPYP01298 95 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 GDF1P27539 372 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 SNCAP37840 140 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 CYB561P49447 251 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 RAB5CP51148 216 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 RND3P61587 244 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 DCAF12Q5T6F0 453 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 FBXW12Q6X9E4 464 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 SLC25A26Q70HW3 274 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 ZNF442Q9H7R0 627 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 RNF122Q9H9V4 155 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 WDFY3Q8IZQ1 3526 aa11□□□□□ -0.65
LINC00540-203ENST00000631321 CDS2O95674 445 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 TSPAN15O95858 294 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 NPBWR2P48146 333 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 KCNJ3P48549 501 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 AVPI1Q5T686 147 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.99□□□□□ -0.65
LINC00540-203ENST00000631321 NAXEQ8NCW5 288 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 CT55Q8WUE5 264 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 PSMF1Q92530 271 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 TP53RKQ96S44 253 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 REPIN1Q9BWE0 567 aaKnown RBP10.99□□□□□ -0.65
LINC00540-203ENST00000631321 FAM86C1Q9NVL1 165 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 LUZP4Q9P127 313 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 LHX6Q9UPM6 363 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 STRAPQ9Y3F4 350 aaKnown RBP10.99□□□□□ -0.65
LINC00540-203ENST00000631321 COLCA2A8K830 154 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 OR7C1O76099 320 aaPredicted RBP10.99□□□□□ -0.65
LINC00540-203ENST00000631321 FOLR2P14207 255 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 PDCD1Q15116 288 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 PEA15Q15121 130 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 C6orf15Q6UXA7 325 aaPredicted RBP10.99□□□□□ -0.65
LINC00540-203ENST00000631321 CLEC9AQ6UXN8 241 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 SLC35G3Q8N808 338 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 RXFP4Q8TDU9 374 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 TMEM56Q96MV1 263 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 EGLN1Q9GZT9 426 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 FGF23Q9GZV9 251 aaPredicted RBP10.99□□□□□ -0.65
LINC00540-203ENST00000631321 TMEM222Q9H0R3 208 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 SMCO4Q9NRQ5 59 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 P4HTMQ9NXG6 502 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 RCL1Q9Y2P8 373 aaKnown RBP10.99□□□□□ -0.65
LINC00540-203ENST00000631321 TMEM56-RWDD3S4R434 201 aa10.99□□□□□ -0.65
LINC00540-203ENST00000631321 C3orf85A0A1B0GTC6 90 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 TRDCB7Z8K6 153 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 NAPSAO96009 420 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 CRYBA1P05813 215 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 COX5BP10606 129 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 ACP1P24666 158 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 MIDNQ504T8 468 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 IGSF11Q5DX21 431 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 TIPARPQ7Z3E1 657 aaKnown RBP10.98□□□□□ -0.65
LINC00540-203ENST00000631321 EXTL1Q92935 676 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 Q9N2K0 584 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 BIN3Q9NQY0 253 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 BOKQ9UMX3 212 aaPredicted RBP10.98□□□□□ -0.65
LINC00540-203ENST00000631321 NOSIPQ9Y314 301 aaKnown RBP10.98□□□□□ -0.65
LINC00540-203ENST00000631321 ARID1AO14497 2285 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 MRPL33O75394 65 aaKnown RBP10.98□□□□□ -0.65
LINC00540-203ENST00000631321 GNRHRP30968 328 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 FGF12P61328 243 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 ARF1P84077 181 aaKnown RBP10.98□□□□□ -0.65
LINC00540-203ENST00000631321 SLC23A3Q6PIS1 610 aa10.98□□□□□ -0.65
LINC00540-203ENST00000631321 DPPA2Q7Z7J5 298 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms