RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 NICN1Q9BSH3 213 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 ZNF665Q9H7R5 613 aa11.98□□□□□ -0.49
UPF1-211ENST00000600868 A0A0A6YYH2 397 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 NKX6-3A6NJ46 265 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 A6NJ64 397 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 CEACAM18A8MTB9 384 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 FOXI3A8MTJ6 420 aaPredicted RBP11.97□□□□□ -0.49
UPF1-211ENST00000600868 RAB27BO00194 218 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 SIGLEC5O15389 551 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 HPGDSO60760 199 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 OR7C1O76099 320 aaPredicted RBP11.97□□□□□ -0.49
UPF1-211ENST00000600868 FUT3P21217 361 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 PITPNBP48739 271 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 CEBPDP49716 269 aaPredicted RBP11.97□□□□□ -0.49
UPF1-211ENST00000600868 VEGFCP49767 419 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 COL10A1Q03692 680 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 PDCD1Q15116 288 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 SIGIRRQ6IA17 410 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 RAB12Q6IQ22 244 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 BIVMQ86UB2 503 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 CMTM4Q8IZR5 234 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 ZNF561Q8N587 486 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 S100A16Q96FQ6 103 aaKnown RBP11.97□□□□□ -0.49
UPF1-211ENST00000600868 MED30Q96HR3 178 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 GAFA1Q96PS6 74 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 CCL13Q99616 98 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 NUDT16L1Q9BRJ7 211 aaKnown RBP11.97□□□□□ -0.49
UPF1-211ENST00000600868 C6orf62Q9GZU0 229 aaPredicted RBP11.97□□□□□ -0.49
UPF1-211ENST00000600868 ATG5Q9H1Y0 275 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 SPACA1Q9HBV2 294 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 PTTG2Q9NZH5 202 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 RCC2Q9P258 522 aaKnown RBP11.97□□□□□ -0.49
UPF1-211ENST00000600868 MIOXQ9UGB7 285 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 MAB21L2Q9Y586 359 aa11.97□□□□□ -0.49
UPF1-211ENST00000600868 FLNBO75369 2602 aaKnown RBP11.97□□□□□ -0.49
UPF1-211ENST00000600868 TRAV24A0A0B4J272 114 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 SLC33A1O00400 549 aaPredicted RBP11.96□□□□□ -0.49
UPF1-211ENST00000600868 TMPRSS2O15393 492 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 RGS5O15539 181 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 ADAM20O43506 726 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 PDCD6O75340 191 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 ZNF737O75373 536 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 TFF1P04155 84 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 GLAP06280 429 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 ZNF44P15621 663 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 ELK1P19419 428 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 BLVRBP30043 206 aaPredicted RBP11.96□□□□□ -0.49
UPF1-211ENST00000600868 IL13RA1P78552 427 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 SCN1BQ07699 218 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 LYPD2Q6UXB3 125 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 OR10R2Q8NGX6 335 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 FAM234AQ9H0X4 552 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 MIXL1Q9H2W2 232 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 PATZ1Q9HBE1 687 aaKnown RBP11.96□□□□□ -0.49
UPF1-211ENST00000600868 DIABLOQ9NR28 239 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 ZNF581Q9P0T4 197 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 METRNQ9UJH8 293 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 ADAM30Q9UKF2 790 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 HSF4Q9ULV5 492 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 PCDHB10Q9UN67 800 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 PEX16Q9Y5Y5 336 aa11.96□□□□□ -0.49
UPF1-211ENST00000600868 CSMD2Q7Z408 3487 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 TMEM82A0PJX8 343 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 F5H0A9 414 aaPredicted RBP11.95□□□□□ -0.5
UPF1-211ENST00000600868 K7N7A8 449 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 SIRPB1O00241 398 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 SOCS1O15524 211 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 CLPXO76031 633 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 EIF4EP06730 217 aaKnown RBP11.95□□□□□ -0.5
UPF1-211ENST00000600868 WNT2P09544 360 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 RPS2P15880 293 aaKnown RBP11.95□□□□□ -0.5
UPF1-211ENST00000600868 CHATP28329 748 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 TMEM50BP56557 158 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 MOGAT2Q3SYC2 334 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 ATAD3CQ5T2N8 411 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 METAP1DQ6UB28 335 aaPredicted RBP11.95□□□□□ -0.5
UPF1-211ENST00000600868 C17orf107Q6ZR85 190 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 NLRC3Q7RTR2 1065 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 LAX1Q8IWV1 398 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 SUMF2Q8NBJ7 301 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 PPP1R35Q8TAP8 253 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 PHF21AQ96BD5 680 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 NEIL1Q96FI4 390 aaPredicted RBP11.95□□□□□ -0.5
UPF1-211ENST00000600868 SNX22Q96L94 193 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 WDFY2Q96P53 400 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 NEDD4LQ96PU5 975 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 SHARPINQ9H0F6 387 aa11.95□□□□□ -0.5
UPF1-211ENST00000600868 IGHV4-61A0A0C4DH41 118 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 FAM25AB3EWG3 89 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 FAM25CB3EWG5 89 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 FAM25GB3EWG6 89 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 MCRIP1C9JLW8 97 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 XRCC3O43542 346 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 PSPNO60542 156 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 IGHV2-5P01817 119 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 CDK2P24941 298 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 S100A5P33763 92 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 KCNJ3P48549 501 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 LMO4P61968 165 aa11.94□□□□□ -0.5
UPF1-211ENST00000600868 ARL6IP1Q15041 203 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms