RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 TNFRSF13BO14836 293 aaPredicted RBP11.6□□□□□ -0.55
C9orf3-221ENST00000489562 DEGS1O15121 323 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 RGS5O15539 181 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 OR2H2O95918 312 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 GYPAP02724 150 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 GLAP06280 429 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 FUT3P21217 361 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 GABRR1P24046 479 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 LMO1P25800 156 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 GABRA2P47869 451 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 PITPNBP48739 271 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 EFNB2P52799 333 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 SNU13P55769 128 aaKnown RBP11.6□□□□□ -0.55
C9orf3-221ENST00000489562 IL13RA1P78552 427 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 HOXA4Q00056 320 aaPredicted RBP11.6□□□□□ -0.55
C9orf3-221ENST00000489562 ARL6IP1Q15041 203 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 TAF9Q16594 264 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 Q6P435 159 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 NLRC3Q7RTR2 1065 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 OR5T2Q8NGG2 359 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 S100A16Q96FQ6 103 aaKnown RBP11.6□□□□□ -0.55
C9orf3-221ENST00000489562 NEDD4LQ96PU5 975 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 C6orf62Q9GZU0 229 aaPredicted RBP11.6□□□□□ -0.55
C9orf3-221ENST00000489562 FAM234AQ9H0X4 552 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 ATG5Q9H1Y0 275 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 DIABLOQ9NR28 239 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 PCDHB10Q9UN67 800 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 PEX16Q9Y5Y5 336 aa11.6□□□□□ -0.55
C9orf3-221ENST00000489562 CEACAM18A8MTB9 384 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 SIGLEC5O15389 551 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 ADAM20O43506 726 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 PDCD6O75340 191 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 HEXAP06865 529 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 DUSP1P28562 367 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 BLVRBP30043 206 aaPredicted RBP11.59□□□□□ -0.55
C9orf3-221ENST00000489562 S100A5P33763 92 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 RBMXP38159 391 aaKnown RBP11.59□□□□□ -0.55
C9orf3-221ENST00000489562 KCNJ3P48549 501 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 RBM39Q14498 530 aaKnown RBP11.59□□□□□ -0.55
C9orf3-221ENST00000489562 CD177Q8N6Q3 437 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 OR10R2Q8NGX6 335 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 RAB39BQ96DA2 213 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 NEIL1Q96FI4 390 aaPredicted RBP11.59□□□□□ -0.55
C9orf3-221ENST00000489562 SNX22Q96L94 193 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 GAFA1Q96PS6 74 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 NICN1Q9BSH3 213 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 PATZ1Q9HBE1 687 aaKnown RBP11.59□□□□□ -0.55
C9orf3-221ENST00000489562 RCC2Q9P258 522 aaKnown RBP11.59□□□□□ -0.55
C9orf3-221ENST00000489562 HSF4Q9ULV5 492 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 PDZD2O15018 2839 aa11.59□□□□□ -0.55
C9orf3-221ENST00000489562 IGHV4-30-2A0A087WSY4 118 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 FAM25AB3EWG3 89 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 FAM25CB3EWG5 89 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 FAM25GB3EWG6 89 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 RAB27BO00194 218 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 SIRPB1O00241 398 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 TMPRSS2O15393 492 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 HPGDSO60760 199 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 CLPXO76031 633 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 RPS2P15880 293 aaKnown RBP11.58□□□□□ -0.56
C9orf3-221ENST00000489562 CHATP28329 748 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 TALDO1P37837 337 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 VEGFCP49767 419 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 NPY4RP50391 375 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 COL10A1Q03692 680 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 SCN1BQ07699 218 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 PLA2G7Q13093 441 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 PAN3Q58A45 887 aaKnown RBP11.58□□□□□ -0.56
C9orf3-221ENST00000489562 LRRC10Q5BKY1 277 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 ATAD3CQ5T2N8 411 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 LINC00299Q6ZSB3 139 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 CMTM4Q8IZR5 234 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 ASCC1Q8N9N2 400 aaKnown RBP11.58□□□□□ -0.56
C9orf3-221ENST00000489562 OR8B3Q8NGG8 313 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 OR5D13Q8NGL4 314 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 WDFY2Q96P53 400 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 OR8B2Q96RD0 313 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 CCL13Q99616 98 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 RABL2AQ9UBK7 228 aaPredicted RBP11.58□□□□□ -0.56
C9orf3-221ENST00000489562 RABL2BQ9UNT1 228 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 CCDC168Q8NDH2 2452 aa11.58□□□□□ -0.56
C9orf3-221ENST00000489562 A0A0A6YYD4 124 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 TRAV24A0A0B4J272 114 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 FOXI3A8MTJ6 420 aaPredicted RBP11.57□□□□□ -0.56
C9orf3-221ENST00000489562 MCRIP1C9JLW8 97 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 F5H0A9 414 aaPredicted RBP11.57□□□□□ -0.56
C9orf3-221ENST00000489562 K7N7A8 449 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 SLC33A1O00400 549 aaPredicted RBP11.57□□□□□ -0.56
C9orf3-221ENST00000489562 CTDSP2O14595 271 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 GPR37O15354 613 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 NDUFB3O43676 98 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 ZNF737O75373 536 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 TPPPO94811 219 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 CSN2P05814 226 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 ELK1P19419 428 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 AMY2BP19961 511 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 CEBPDP49716 269 aaPredicted RBP11.57□□□□□ -0.56
C9orf3-221ENST00000489562 C11orf91Q3C1V1 193 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 SIGIRRQ6IA17 410 aa11.57□□□□□ -0.56
C9orf3-221ENST00000489562 BAIAP2L2Q6UXY1 529 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms