RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ZNF837Q96EG3 531 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-204ENST00000392003 FOXB1Q99853 325 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 DDA1Q9BW61 102 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 TM2D1Q9BX74 207 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 NMES1Q9C002 83 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 RAB18Q9NP72 206 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 FOXJ2Q9P0K8 574 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 SHPKQ9UHJ6 478 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 CSAG2Q9Y5P2 127 aa8.4□□□□□ -1.06
COL6A3-204ENST00000392003 A0A0G2JMM0 328 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 A0A1W2PPB8 328 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 A0A1W2PRS3 328 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 KIR3DP1A8MWS1 328 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 TCF21O43680 179 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 B4GALT1P15291 398 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 ZNF32P17041 273 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 B3GALT5-AS1P59052 145 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 RBM39Q14498 530 aaKnown RBP8.39□□□□□ -1.07
COL6A3-204ENST00000392003 CEACAM16Q2WEN9 425 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 SNAI3Q3KNW1 292 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 WDR73Q6P4I2 378 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 PHYHIPLQ96FC7 376 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 METTL1Q9UBP6 276 aaKnown RBP8.39□□□□□ -1.07
COL6A3-204ENST00000392003 ZNF391Q9UJN7 358 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 RTTNQ86VV8 2226 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 FRYLO94915 3013 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 TNRC6BQ9UPQ9 1833 aaKnown RBP8.39□□□□□ -1.07
COL6A3-204ENST00000392003 C9orf172C9J069 976 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 CDX4O14627 284 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-204ENST00000392003 CYB5R3P00387 301 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-204ENST00000392003 PET100P0DJ07 73 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 AKR1C3P42330 323 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 TRIP6Q15654 476 aaKnown RBP8.39□□□□□ -1.07
COL6A3-204ENST00000392003 RSPO1Q2MKA7 263 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-204ENST00000392003 DHRS7BQ6IAN0 325 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-204ENST00000392003 OR13G1Q8NGZ3 307 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 TCTEX1D2Q8WW35 142 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 TMPRSS5Q9H3S3 457 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 C5orf66Q9H5L9 145 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 TAS2R3Q9NYW6 316 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 OR6C6A6NF89 314 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 CBY3A6NI87 242 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 PCNX2A6NKB5 2137 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 KNG1P01042 644 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 SRYQ05066 204 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 ODF1Q14990 250 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 CLEC18BQ6UXF7 455 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 LHFPL2Q6ZUX7 228 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 C6orf201Q7Z4U5 140 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 RCC1LQ96I51 464 aaKnown RBP8.39□□□□□ -1.07
COL6A3-204ENST00000392003 PRRG4Q9BZD6 226 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 RASL12Q9NYN1 266 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 B4GALT7Q9UBV7 327 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 ZDHHC8Q9ULC8 765 aa8.39□□□□□ -1.07
COL6A3-204ENST00000392003 TEX13DA0A0J9YY54 714 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-204ENST00000392003 RNF222A6NCQ9 220 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 SYNGR3O43761 229 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 CYTIPO60759 359 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 NRASP01111 189 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 CNR1P21554 472 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 MRPL49Q13405 166 aaKnown RBP8.38□□□□□ -1.07
COL6A3-204ENST00000392003 NTNG2Q96CW9 530 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 GPR87Q9BY21 358 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 RGCCQ9H4X1 137 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 FN3KRPQ9HA64 309 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 FIGNL2A6NMB9 653 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 ZNF716A6NP11 495 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 COLCA2A8K830 154 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 CEACAM18A8MTB9 384 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 ANGPTL7O43827 346 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 MBPP02686 304 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-204ENST00000392003 RFPL3SP0C7P2 107 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 TPT1P13693 172 aaKnown RBP8.38□□□□□ -1.07
COL6A3-204ENST00000392003 CRYGSP22914 178 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 CLDN15P56746 228 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 RIPPLY2Q5TAB7 128 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 SPINK14Q6IE38 97 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 Q6ZSR3 168 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 GGNQ86UU5 652 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 THNSL2Q86YJ6 484 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 SULF2Q8IWU5 870 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 SGPP2Q8IWX5 399 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 SPAG16Q8N0X2 631 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 ZNF75AQ96N20 296 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 GSKIPQ9P0R6 139 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 OSGIN2Q9Y236 505 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 MRPL33O75394 65 aaKnown RBP8.38□□□□□ -1.07
COL6A3-204ENST00000392003 IFNA21P01568 189 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 IGHV2-5P01817 119 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 PATE4P0C8F1 98 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 GLRA1P23415 457 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 Q0VFX4 171 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 AIMP2Q13155 320 aaKnown RBP8.38□□□□□ -1.07
COL6A3-204ENST00000392003 TAF9Q16594 264 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 MOB3CQ70IA8 216 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 LHFPL4Q7Z7J7 247 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 LHFPL1Q86WI0 220 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 UBAC2Q8NBM4 344 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 TMEM230Q96A57 120 aa8.38□□□□□ -1.07
COL6A3-204ENST00000392003 Q96M66 194 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms