RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TREML4Q6UXN2 200 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 SYS1Q8N2H4 156 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 AJUBAQ96IF1 538 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 OPALINQ96PE5 141 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 NEK6Q9HC98 313 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 ERVK13-1Q9NX77 482 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 IL36RNQ9UBH0 155 aa16.87■□□□□ 0.29
CLN3-219ENST00000565778 TRBV2A0A0J9YWF9 115 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 TMEM82A0PJX8 343 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 IGHA1P01876 353 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 ZNF728P0DKX0 622 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 PAX6P26367 422 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 GBX2P52951 348 aaPredicted RBP16.86■□□□□ 0.29
CLN3-219ENST00000565778 MEF2CQ06413 473 aaPredicted RBP16.86■□□□□ 0.29
CLN3-219ENST00000565778 GRK1Q15835 563 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 LY6EQ16553 131 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 ZNF555Q8NEP9 628 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 OR13C9Q8NGT0 318 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 STMN2Q93045 179 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 SPACA5Q96QH8 159 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 CITED1Q99966 193 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 CHST6Q9GZX3 395 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 C16orf95Q9H693 158 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 SEBOXQ9HB31 216 aaPredicted RBP16.86■□□□□ 0.29
CLN3-219ENST00000565778 INPP5EQ9NRR6 644 aa16.86■□□□□ 0.29
CLN3-219ENST00000565778 hADV38S2A0JD32 116 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 SH2D1BO14796 132 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 TSPAN9O75954 239 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 RPSAP08865 295 aaKnown RBP16.85■□□□□ 0.29
CLN3-219ENST00000565778 DLX6P56179 175 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 PROK1P58294 105 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 KRTAP10-3P60369 221 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 LRRC75BQ2VPJ9 315 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 SLC35E4Q6ICL7 350 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 OR52N4Q8NGI2 321 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 OR52I1Q8NGK6 324 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 OR5D14Q8NGL3 314 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 OR13D1Q8NGV5 346 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 OR5AK2Q8NH90 309 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 COMMD4Q9H0A8 199 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 ZCCHC4Q9H5U6 513 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 MRPS18AQ9NVS2 196 aaKnown RBP16.85■□□□□ 0.29
CLN3-219ENST00000565778 GSTK1Q9Y2Q3 226 aa16.85■□□□□ 0.29
CLN3-219ENST00000565778 E9PI62 339 aa16.84■□□□□ 0.29
CLN3-219ENST00000565778 CLPXO76031 633 aa16.84■□□□□ 0.29
CLN3-219ENST00000565778 MT-ND2P03891 347 aa16.84■□□□□ 0.29
CLN3-219ENST00000565778 ARG1P05089 322 aa16.84■□□□□ 0.29
CLN3-219ENST00000565778 MRPL28Q13084 256 aaKnown RBP16.84■□□□□ 0.29
CLN3-219ENST00000565778 ZNF146Q15072 292 aa16.84■□□□□ 0.29
CLN3-219ENST00000565778 SERPINA12Q8IW75 414 aa16.84■□□□□ 0.29
CLN3-219ENST00000565778 TPRX1Q8N7U7 411 aa16.84■□□□□ 0.29
CLN3-219ENST00000565778 OR5D18Q8NGL1 313 aa16.84■□□□□ 0.29
CLN3-219ENST00000565778 PPP1R35Q8TAP8 253 aa16.84■□□□□ 0.29
CLN3-219ENST00000565778 ZNF714Q96N38 554 aa16.84■□□□□ 0.29
CLN3-219ENST00000565778 HMG20AQ9NP66 347 aa16.84■□□□□ 0.29
CLN3-219ENST00000565778 TMEM212A6NML5 194 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 PSPNO60542 156 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 ZFPL1O95159 310 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 HCKP08631 526 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 CCDC159P0C7I6 412 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 IGHV1-8P0DP01 117 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 SCN1BQ07699 218 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 DYNC1I2Q13409 638 aaKnown RBP16.83■□□□□ 0.28
CLN3-219ENST00000565778 AANATQ16613 207 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 SPIN3Q5JUX0 258 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 LPCAT4Q643R3 524 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 RNF144BQ7Z419 303 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 LHFPL4Q7Z7J7 247 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 OR4S1Q8NGB4 309 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 PDCD1LG2Q9BQ51 273 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 ZNF649Q9BS31 505 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 TCF7L1Q9HCS4 588 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 SMPD3Q9NY59 655 aaPredicted RBP16.83■□□□□ 0.28
CLN3-219ENST00000565778 PCDHGB5Q9Y5G0 923 aa16.83■□□□□ 0.28
CLN3-219ENST00000565778 IGKV1-12A0A0C4DH73 117 aa16.82■□□□□ 0.28
CLN3-219ENST00000565778 SIRPB1O00241 398 aa16.82■□□□□ 0.28
CLN3-219ENST00000565778 MGST3O14880 152 aa16.82■□□□□ 0.28
CLN3-219ENST00000565778 TIMM23O14925 209 aa16.82■□□□□ 0.28
CLN3-219ENST00000565778 IGKV1D-12P01611 117 aa16.82■□□□□ 0.28
CLN3-219ENST00000565778 RBP4P02753 201 aa16.82■□□□□ 0.28
CLN3-219ENST00000565778 TMEM225BP0DP42 221 aa16.82■□□□□ 0.28
CLN3-219ENST00000565778 SMN1Q16637 294 aaKnown RBP16.82■□□□□ 0.28
CLN3-219ENST00000565778 APH1BQ8WW43 257 aa16.82■□□□□ 0.28
CLN3-219ENST00000565778 EXOSC4Q9NPD3 245 aaKnown RBP16.82■□□□□ 0.28
CLN3-219ENST00000565778 DHDHQ9UQ10 334 aa16.82■□□□□ 0.28
CLN3-219ENST00000565778 LINC00312Q9Y6C7 94 aa16.82■□□□□ 0.28
CLN3-219ENST00000565778 FAM90A8PA6NJQ4 464 aa16.81■□□□□ 0.28
CLN3-219ENST00000565778 M0QZ24 198 aa16.81■□□□□ 0.28
CLN3-219ENST00000565778 KDM4BO94953 1096 aa16.81■□□□□ 0.28
CLN3-219ENST00000565778 GABRA5P31644 462 aa16.81■□□□□ 0.28
CLN3-219ENST00000565778 ZSCAN26Q16670 478 aa16.81■□□□□ 0.28
CLN3-219ENST00000565778 LRRC36Q1X8D7 754 aa16.81■□□□□ 0.28
CLN3-219ENST00000565778 PLA1AQ53H76 456 aa16.81■□□□□ 0.28
CLN3-219ENST00000565778 TRAPPC6BQ86SZ2 158 aa16.81■□□□□ 0.28
CLN3-219ENST00000565778 SAXO1Q8IYX7 474 aa16.81■□□□□ 0.28
CLN3-219ENST00000565778 HAVCR2Q8TDQ0 301 aa16.81■□□□□ 0.28
CLN3-219ENST00000565778 TSEN15Q8WW01 171 aaKnown RBP16.81■□□□□ 0.28
CLN3-219ENST00000565778 MALSU1Q96EH3 234 aa16.81■□□□□ 0.28
CLN3-219ENST00000565778 RDH12Q96NR8 316 aa16.81■□□□□ 0.28
CLN3-219ENST00000565778 RAB18Q9NP72 206 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms