RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 FAM206AQ9NX38 181 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 KLHDC2Q9Y2U9 406 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 PAM16Q9Y3D7 125 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 SCN2AQ99250 2005 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 JMJD1CQ15652 2540 aa4.39□□□□□ -1.71
LDLR-209ENST00000558528 TRAV24A0A0B4J272 114 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 CLDN25C9JDP6 229 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 FAM90A26D6RGX4 464 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 SYNGR3O43761 229 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 SRSF10O75494 262 aaKnown RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 DHRS3O75911 302 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 CLDN1O95832 211 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 CGAP01215 116 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 ALDOBP05062 364 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 MMP7P09237 267 aaPredicted RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 CALCBP10092 127 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 PRF1P14222 555 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 B4GALT1P15291 398 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 SELEP16581 610 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 ZNF20P17024 532 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 RAB3AP20336 220 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 PSMB1P20618 241 aaKnown RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 COX5AP20674 150 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 CCL1P22362 96 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 PTBP1P26599 531 aaKnown RBP eCLIP4.38□□□□□ -1.71
LDLR-209ENST00000558528 STOMP27105 288 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 TALDO1P37837 337 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 CD79BP40259 229 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 RPS27P42677 84 aaKnown RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 MMP15P51511 669 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 ZNF121P58317 390 aaPredicted RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 NANOS3P60323 173 aaKnown RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 RIPPLY1Q0D2K3 151 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 ZNF846Q147U1 533 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 SPCS2Q15005 226 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 GABRA6Q16445 453 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 KIF26BQ2KJY2 2108 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 SLC25A35Q3KQZ1 300 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 KRTAP27-1Q3LI81 207 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 LBHQ53QV2 105 aaPredicted RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 PABPC1L2AQ5JQF8 200 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 SPANXN2Q5MJ10 180 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 DDI2Q5TDH0 399 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 RTL6Q6ICC9 239 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 METAP1DQ6UB28 335 aaPredicted RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 CD164L2Q6UWJ8 174 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 CCBE1Q6UXH8 406 aaPredicted RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 Q6ZSR3 168 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 COMMD2Q86X83 199 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 PRSS35Q8N3Z0 413 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 ZNF433Q8N7K0 673 aaPredicted RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 SEMA6DQ8NFY4 1073 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 OR56B2PQ8NGI1 322 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 OR13C3Q8NGS6 347 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 SMAP2Q8WU79 429 aaPredicted RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 PP6455Q8WZ26 134 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 HSD17B8Q92506 261 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 RPL3LQ92901 407 aaKnown RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 TMEM106AQ96A25 262 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 APOBEC3DQ96AK3 386 aaPredicted RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 ORAI1Q96D31 301 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 STARD4Q96DR4 205 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 DERL3Q96Q80 235 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 AMELYQ99218 206 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 KCNS3Q9BQ31 491 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 TTTY10Q9BZA0 68 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 NXF2Q9GZY0 626 aaKnown RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 ZCCHC4Q9H5U6 513 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 PLEKHA1Q9HB21 404 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 PALMDQ9NP74 551 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 NOX4Q9NPH5 578 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 TMEM138Q9NPI0 162 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 SLC17A5Q9NRA2 495 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 ZNF275Q9NSD4 429 aaPredicted RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 GHRLQ9UBU3 117 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 RNF150Q9ULK6 438 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 NOP16Q9Y3C1 178 aaKnown RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 V9GY05 133 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 CCDC88CQ9P219 2028 aa4.38□□□□□ -1.71
LDLR-209ENST00000558528 ZNF469Q96JG9 3925 aaPredicted RBP4.38□□□□□ -1.71
LDLR-209ENST00000558528 CSPG4Q6UVK1 2322 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 TRGV8A0A0C4DH27 118 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 SCO2A0A1W2PP80 73 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 FAM25EA8MYX2 175 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 NPIPB6E9PJ23 425 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 C16orf97H3BN30 126 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 MAGEB4O15481 346 aaPredicted RBP4.37□□□□□ -1.71
LDLR-209ENST00000558528 RGS5O15539 181 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 ATP6V1G1O75348 118 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 TNFSF13O75888 250 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 SCGNO76038 276 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 IGHV3-9P01782 118 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 TTRP02766 147 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 ACSM4P0C7M7 580 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 UBBP0CG47 229 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 PRKACBP22694 351 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 CRYGSP22914 178 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 IGHV1-2P23083 117 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 CFPP27918 469 aa4.37□□□□□ -1.71
LDLR-209ENST00000558528 CD40LGP29965 261 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms