RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 EMG1Q92979 244 aaKnown RBP13.42□□□□□ -0.26
VPS29-204ENST00000548259 P2RX4Q99571 388 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 MAGIXQ9H6Y5 334 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 PALMDQ9NP74 551 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 LSM4Q9Y4Z0 139 aaKnown RBP13.42□□□□□ -0.26
VPS29-204ENST00000548259 V9GYS6 101 aa13.42□□□□□ -0.26
VPS29-204ENST00000548259 SH2D7A6NKC9 451 aaPredicted RBP13.41□□□□□ -0.26
VPS29-204ENST00000548259 AMY1AP04745 511 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 AMY2AP04746 511 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 ERP29P30040 261 aaKnown RBP13.41□□□□□ -0.26
VPS29-204ENST00000548259 MNAT1P51948 309 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 GINS1Q14691 196 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 KPNB1Q14974 876 aaKnown RBP13.41□□□□□ -0.26
VPS29-204ENST00000548259 HEPN1Q6WQI6 88 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 TPRX1Q8N7U7 411 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 OR5M8Q8NGP6 311 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 TRMT10AQ8TBZ6 339 aaKnown RBP13.41□□□□□ -0.26
VPS29-204ENST00000548259 FEVQ99581 238 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 NIPSNAP1Q9BPW8 284 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 CHST6Q9GZX3 395 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 ZNF556Q9HAH1 456 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 ACTR3BQ9P1U1 418 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 HHLA2Q9UM44 414 aa13.41□□□□□ -0.26
VPS29-204ENST00000548259 TMEM82A0PJX8 343 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 CCL24O00175 119 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 GATBO75879 557 aaKnown RBP13.4□□□□□ -0.26
VPS29-204ENST00000548259 TTRP02766 147 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 CDK2P24941 298 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 HCCSP53701 268 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 P2RX3P56373 397 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 APOFQ13790 326 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 FAM98BQ52LJ0 330 aaKnown RBP13.4□□□□□ -0.26
VPS29-204ENST00000548259 TPTE2P1Q5T6R2 138 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 C16orf89Q6UX73 402 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 CYP2R1Q6VVX0 501 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 FOXRED2Q8IWF2 684 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 OR4D6Q8NGJ1 314 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 GIPC3Q8TF64 312 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 SLAMF9Q96A28 289 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 ASCL2Q99929 193 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 MYLK2Q9H1R3 596 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 TAS2R3Q9NYW6 316 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 MTCH1Q9NZJ7 389 aa13.4□□□□□ -0.26
VPS29-204ENST00000548259 BUB1B-PAK6H3BSN5 160 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 SERPINA3P01011 423 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 IGLV1-47P01700 117 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 LYL1P12980 280 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 CHATP28329 748 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 ECI1P42126 302 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 FUT6P51993 359 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 CDC42P60953 191 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 RBM39Q14498 530 aaKnown RBP13.39□□□□□ -0.27
VPS29-204ENST00000548259 NKAPLQ5M9Q1 402 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 PRAMEF5Q5TYX0 476 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 SLC25A26Q70HW3 274 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 THNSL2Q86YJ6 484 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 ELMOD2Q8IZ81 293 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 OR14K1Q8NGZ2 314 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 OR8U1Q8NH10 309 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 PRR25Q96S07 402 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 GON7Q9BXV9 100 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 CADM1Q9BY67 442 aaKnown RBP13.39□□□□□ -0.27
VPS29-204ENST00000548259 OR52A1Q9UKL2 312 aa13.39□□□□□ -0.27
VPS29-204ENST00000548259 AMMECR1Q9Y4X0 333 aaPredicted RBP13.39□□□□□ -0.27
VPS29-204ENST00000548259 SIRT4Q9Y6E7 314 aaPredicted RBP13.39□□□□□ -0.27
VPS29-204ENST00000548259 MMP23AO75900 390 aa13.38□□□□□ -0.27
VPS29-204ENST00000548259 INMTO95050 263 aa13.38□□□□□ -0.27
VPS29-204ENST00000548259 IGHA1P01876 353 aa13.38□□□□□ -0.27
VPS29-204ENST00000548259 MRPL3P09001 348 aaKnown RBP13.38□□□□□ -0.27
VPS29-204ENST00000548259 CD34P28906 385 aa13.38□□□□□ -0.27
VPS29-204ENST00000548259 MFGE8Q08431 387 aaPredicted RBP13.38□□□□□ -0.27
VPS29-204ENST00000548259 HES1Q14469 280 aa13.38□□□□□ -0.27
VPS29-204ENST00000548259 HLA-DRB5Q30154 266 aa13.38□□□□□ -0.27
VPS29-204ENST00000548259 TEX38Q6PEX7 206 aa13.38□□□□□ -0.27
VPS29-204ENST00000548259 OR52N4Q8NGI2 321 aa13.38□□□□□ -0.27
VPS29-204ENST00000548259 RPEQ96AT9 228 aa13.38□□□□□ -0.27
VPS29-204ENST00000548259 BORCS8Q96FH0 119 aa13.38□□□□□ -0.27
VPS29-204ENST00000548259 SNX5Q9Y5X3 404 aa13.38□□□□□ -0.27
VPS29-204ENST00000548259 R4GMQ9 66 aa13.38□□□□□ -0.27
VPS29-204ENST00000548259 A6NIN4 97 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 FGF16O43320 207 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 PTGFRP43088 359 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 LUMP51884 338 aaPredicted RBP13.37□□□□□ -0.27
VPS29-204ENST00000548259 ZNF91Q05481 1191 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 SPIN3Q5JUX0 258 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 SLC35E3Q7Z769 313 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 DEFB107AQ8IZN7 70 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 CCDC54Q8NEL0 328 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 BBS1Q8NFJ9 593 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 TOMM40LQ969M1 308 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 HRASLS5Q96KN8 279 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 CNN2Q99439 309 aaKnown RBP13.37□□□□□ -0.27
VPS29-204ENST00000548259 MNTQ99583 582 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 ADI1Q9BV57 179 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 KRT84Q9NSB2 600 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 SMAD5-AS1Q9Y6J3 95 aa13.37□□□□□ -0.27
VPS29-204ENST00000548259 SEC14L6B5MCN3 397 aa13.36□□□□□ -0.27
VPS29-204ENST00000548259 F8VVB4 439 aa13.36□□□□□ -0.27
VPS29-204ENST00000548259 F8VWA3 439 aa13.36□□□□□ -0.27
VPS29-204ENST00000548259 SH2D1BO14796 132 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms