RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SEBOXQ9HB31 216 aaPredicted RBP11.43□□□□□ -0.58
UPF3A-204ENST00000475218 SIGLEC9Q9Y336 463 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 TGP01266 2768 aa11.43□□□□□ -0.58
UPF3A-204ENST00000475218 J3QLW9 94 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 HAND1O96004 215 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 ZNF19P17023 458 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 AZGP1P25311 298 aaKnown RBP11.42□□□□□ -0.58
UPF3A-204ENST00000475218 RBP2P50120 134 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 CNN3Q15417 329 aaKnown RBP11.42□□□□□ -0.58
UPF3A-204ENST00000475218 LY6EQ16553 131 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 LRRC75BQ2VPJ9 315 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 LHFPL3Q86UP9 236 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 TPRX1Q8N7U7 411 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 APH1BQ8WW43 257 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 EMG1Q92979 244 aaKnown RBP11.42□□□□□ -0.58
UPF3A-204ENST00000475218 RFT1Q96AA3 541 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 SPACA5Q96QH8 159 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 NR1H4Q96RI1 486 aaPredicted RBP11.42□□□□□ -0.58
UPF3A-204ENST00000475218 FAM192AQ9GZU8 254 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 HEXA-AS1Q9H8Q6 139 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 S100A14Q9HCY8 104 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 AMBNQ9NP70 447 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 SCOCQ9UIL1 159 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 ORC6Q9Y5N6 252 aa11.42□□□□□ -0.58
UPF3A-204ENST00000475218 TRBV2A0A0J9YWF9 115 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 BTBD17A6NE02 478 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 ZNF728P0DKX0 622 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 PDZK1IP1Q13113 114 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 ALKBH1Q13686 389 aaKnown RBP11.41□□□□□ -0.58
UPF3A-204ENST00000475218 GALEQ14376 348 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 ZNF146Q15072 292 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 AANATQ16613 207 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 HIST2H2BDQ6DRA6 164 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 OR4S1Q8NGB4 309 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 SNX22Q96L94 193 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 CHST6Q9GZX3 395 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 GMPPBQ9Y5P6 360 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 MAGEA13PA6NCF6 341 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 MMP23AO75900 390 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 TSPAN15O95858 294 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 SERPINA3P01011 423 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 HTR1AP08908 422 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 JUNBP17275 347 aaPredicted RBP11.41□□□□□ -0.58
UPF3A-204ENST00000475218 OR3A1P47881 315 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 POU3F4P49335 361 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 MTCP1P56278 107 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 EDDM3BP56851 147 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 CCBE1Q6UXH8 406 aaPredicted RBP11.41□□□□□ -0.58
UPF3A-204ENST00000475218 FAM58AQ8N1B3 248 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 OR11H6Q8NGC7 330 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 ALG8Q9BVK2 526 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 HMG20AQ9NP66 347 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 FBLN5Q9UBX5 448 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 HHLA2Q9UM44 414 aa11.41□□□□□ -0.58
UPF3A-204ENST00000475218 PRKDCP78527 4128 aaKnown RBP11.41□□□□□ -0.58
UPF3A-204ENST00000475218 A0A1W2PPH5 198 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 ZFPL1O95159 310 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 RBP4P02753 201 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 MT-ND2P03891 347 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 IGHV1-8P0DP01 117 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 EFNB2P52799 333 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 ATP1B3P54709 279 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 EDDM3AQ14507 147 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 ZNF626Q68DY1 528 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 GDPD3Q7L5L3 318 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 PQLC1Q8N2U9 271 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 SPSB1Q96BD6 273 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 OPALINQ96PE5 141 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 C9orf16Q9BUW7 83 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 MRPS18AQ9NVS2 196 aaKnown RBP11.4□□□□□ -0.58
UPF3A-204ENST00000475218 FAM118AQ9NWS6 357 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 ERVK13-1Q9NX77 482 aa11.4□□□□□ -0.58
UPF3A-204ENST00000475218 WBP4O75554 376 aaKnown RBP11.39□□□□□ -0.59
UPF3A-204ENST00000475218 ZNF20P17024 532 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 PRKACBP22694 351 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 RAB13P51153 203 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 SNU13P55769 128 aaKnown RBP11.39□□□□□ -0.59
UPF3A-204ENST00000475218 ACTA2P62736 377 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 ACTG2P63267 376 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 MEF2CQ06413 473 aaPredicted RBP11.39□□□□□ -0.59
UPF3A-204ENST00000475218 SMN1Q16637 294 aaKnown RBP11.39□□□□□ -0.59
UPF3A-204ENST00000475218 BAIAP2L2Q6UXY1 529 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 LHFPL2Q6ZUX7 228 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 Q8IYB0 196 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 SYS1Q8N2H4 156 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 OR52I1Q8NGK6 324 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 OR5D18Q8NGL1 313 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 OR13C3Q8NGS6 347 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 OR13C9Q8NGT0 318 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 RGP1Q92546 391 aaPredicted RBP11.39□□□□□ -0.59
UPF3A-204ENST00000475218 TSC22D3Q99576 134 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 VCX3BQ9H321 246 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 LOC100130705A0A1B0GUX0 176 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 KDM4BO94953 1096 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 LIMS3P0CW19 117 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 LIMS4P0CW20 117 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 PRKACAP17612 351 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 KIR2DS4P43632 304 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 ZP1P60852 638 aa11.39□□□□□ -0.59
UPF3A-204ENST00000475218 RCN1Q15293 331 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms