RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 BBS1Q8NFJ9 593 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 OR8G5Q8NG78 346 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 OR52H1Q8NGJ2 320 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 OR13G1Q8NGZ3 307 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 OR2T27Q8NH04 317 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 FAM81AQ8TBF8 368 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SGK3Q96BR1 496 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 Q96MT0 163 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF582Q96NG8 517 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 MYCBPQ99417 103 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 CNN2Q99439 309 aaKnown RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SLC22A4Q9H015 551 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 RGCCQ9H4X1 137 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 DCLRE1BQ9H816 532 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 TMEM100Q9NV29 134 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 FAM118AQ9NWS6 357 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 IMPAD1Q9NX62 359 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 SMPD3Q9NY59 655 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 MYEF2Q9P2K5 600 aaKnown RBP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF391Q9UJN7 358 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 LAMP5Q9UJQ1 280 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.07□□□□□ -2.08
VPS13A-208ENST00000423463 GMPPBQ9Y5P6 360 aa2.07□□□□□ -2.08
VPS13A-208ENST00000423463 RTTNQ86VV8 2226 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 ITPR2Q14571 2701 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 ARID1AO14497 2285 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 IGHV4-30-2A0A087WSY4 118 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 A0A096LNT2 108 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 IGHV1-69-2A0A0G2JMI3 117 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 LOC100130705A0A1B0GUX0 176 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 A0A1B0GWJ7 208 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 A0A1W2PS18 150 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 GGT3PA6NGU5 568 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 ZSCAN5BA6NJL1 495 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 CD300LBA8K4G0 201 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 CASQ2O14958 399 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-208ENST00000423463 XRCC3O43542 346 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 GMDSO60547 372 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 LIPFP07098 398 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 TACSTD2P09758 323 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 CFC1BP0CG36 223 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 CFC1P0CG37 223 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 PSKH1P11801 424 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 ATP6V1B1P15313 513 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 COL8A2P25067 703 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 MT3P25713 68 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 GABRA5P31644 462 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 ATP6V1E1P36543 226 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 MAGEB1P43366 347 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 GPR6P46095 362 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-208ENST00000423463 CX3CR1P49238 355 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 SRP9P49458 86 aaKnown RBP2.06□□□□□ -2.08
VPS13A-208ENST00000423463 HCCSP53701 268 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 ELF3P78545 371 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-208ENST00000423463 CCL8P80075 99 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 RPL24P83731 157 aaKnown RBP2.06□□□□□ -2.08
VPS13A-208ENST00000423463 TNFAIP6P98066 277 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-208ENST00000423463 MZT1Q08AG7 82 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 PNRC1Q12796 327 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-208ENST00000423463 IL18R1Q13478 541 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 GK2Q14410 553 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-208ENST00000423463 RCN1Q15293 331 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 TRIP10Q15642 601 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 CARTPTQ16568 116 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 LPCAT4Q643R3 524 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 OR2T2Q6IF00 324 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF322Q6U7Q0 402 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-208ENST00000423463 Q6ZR03 302 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 PLEKHG7Q6ZR37 379 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 PGAP1Q75T13 922 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 NFE4Q86UQ8 179 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 SLC35F2Q8IXU6 374 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF679Q8IYX0 411 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 DHRSXQ8N5I4 330 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF525Q8N782 197 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 SPERTQ8NA61 448 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 RHOXF1Q8NHV9 184 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 ZFAND2BQ8WV99 257 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 SPRYD4Q8WW59 207 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-208ENST00000423463 RAB1CQ92928 201 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 SLAMF9Q96A28 289 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 OR8B4Q96RC9 309 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 AMELYQ99218 206 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 APOL4Q9BPW4 351 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 SLC30A2Q9BRI3 323 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 MROQ9BYG7 248 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 DPAGT1Q9H3H5 408 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 TPK1Q9H3S4 243 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 ADGRL4Q9HBW9 690 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 CLN6Q9NWW5 311 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 IL19Q9UHD0 177 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 UTP20O75691 2785 aaKnown RBP2.06□□□□□ -2.08
VPS13A-208ENST00000423463 APCP25054 2843 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 CCDC168Q8NDH2 2452 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 PLCE1Q9P212 2302 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 POLQO75417 2590 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 PDZD2O15018 2839 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 IGLV5-45A0A087WSX0 123 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 A0A0U1RQV5 110 aa2.06□□□□□ -2.08
VPS13A-208ENST00000423463 TMEM269A0A1B0GVZ9 245 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms