RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SDSLQ96GA7 329 aa18.43■□□□□ 0.54
SHMT1-203ENST00000354098 DNTTIP1Q9H147 329 aa18.43■□□□□ 0.54
SHMT1-203ENST00000354098 PLGRKTQ9HBL7 147 aa18.43■□□□□ 0.54
SHMT1-203ENST00000354098 SCOCQ9UIL1 159 aa18.43■□□□□ 0.54
SHMT1-203ENST00000354098 DVL1O14640 695 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 SLC22A1O15245 554 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 CLEC2LP0C7M8 214 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 RPL5P46777 297 aaKnown RBP18.42■□□□□ 0.54
SHMT1-203ENST00000354098 LCN2P80188 198 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 MXD1Q05195 221 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 ZNF146Q15072 292 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 PDCD1Q15116 288 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 ESCO2Q56NI9 601 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 GPR107Q5VW38 600 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 FAM166AQ6J272 317 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 SLC16A12Q6ZSM3 486 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 SLC25A28Q96A46 364 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 SSBP3Q9BWW4 388 aaPredicted RBP18.42■□□□□ 0.54
SHMT1-203ENST00000354098 KCNK15Q9H427 330 aa18.42■□□□□ 0.54
SHMT1-203ENST00000354098 NKX6-3A6NJ46 265 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 SLC17A2O00624 439 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 SIGLEC5O15389 551 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 CSTBP04080 98 aaKnown RBP18.41■□□□□ 0.54
SHMT1-203ENST00000354098 GZMKP49863 264 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 CAV3P56539 151 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 CLDN12P56749 244 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 IL13RA1P78552 427 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 PIGYQ3MUY2 71 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 HES5Q5TA89 166 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 WDR25Q64LD2 544 aaPredicted RBP18.41■□□□□ 0.54
SHMT1-203ENST00000354098 CYB5R2Q6BCY4 276 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 LINC01356Q8N9X3 169 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 OR6M1Q8NGM8 313 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 CLN8Q9UBY8 286 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 A0A0G2JK05 382 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 KIAA1324LA8MWY0 1029 aaPredicted RBP18.41■□□□□ 0.54
SHMT1-203ENST00000354098 B4DSR2 109 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 HAND1O96004 215 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 PSMD7P51665 324 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 GNB2P62879 340 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 COL10A1Q03692 680 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 P2RY14Q15391 338 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 SPIN3Q5JUX0 258 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 METAP1DQ6UB28 335 aaPredicted RBP18.41■□□□□ 0.54
SHMT1-203ENST00000354098 FIP1L1Q6UN15 594 aaKnown RBP18.41■□□□□ 0.54
SHMT1-203ENST00000354098 TMEM104Q8NE00 496 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 OR51T1Q8NGJ9 327 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 MED30Q96HR3 178 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 GSX1Q9H4S2 264 aaPredicted RBP18.41■□□□□ 0.54
SHMT1-203ENST00000354098 BANF2Q9H503 90 aa18.41■□□□□ 0.54
SHMT1-203ENST00000354098 ZNF780AO75290 641 aaPredicted RBP18.4■□□□□ 0.54
SHMT1-203ENST00000354098 LY6G6DO95868 133 aa18.4■□□□□ 0.54
SHMT1-203ENST00000354098 TGFAP01135 160 aa18.4■□□□□ 0.54
SHMT1-203ENST00000354098 ZNF16P17020 682 aaPredicted RBP18.4■□□□□ 0.54
SHMT1-203ENST00000354098 CPT2P23786 658 aa18.4■□□□□ 0.54
SHMT1-203ENST00000354098 SCN1BQ07699 218 aa18.4■□□□□ 0.54
SHMT1-203ENST00000354098 OR10K2Q6IF99 312 aa18.4■□□□□ 0.54
SHMT1-203ENST00000354098 TPRA1Q86W33 373 aa18.4■□□□□ 0.54
SHMT1-203ENST00000354098 ANKRD13BQ86YJ7 626 aa18.4■□□□□ 0.54
SHMT1-203ENST00000354098 OSR2Q8N2R0 312 aa18.4■□□□□ 0.54
SHMT1-203ENST00000354098 ZNF581Q9P0T4 197 aa18.4■□□□□ 0.54
SHMT1-203ENST00000354098 ST3GAL6Q9Y274 331 aa18.4■□□□□ 0.54
SHMT1-203ENST00000354098 F8P00451 2351 aa18.4■□□□□ 0.54
SHMT1-203ENST00000354098 IFITM5A6NNB3 132 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 NDUFB3O43676 98 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 MSMBP08118 114 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 VSIG8P0DPA2 414 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 BMXP51813 675 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 VBP1P61758 197 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 NCS1P62166 190 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 GPR176Q14439 515 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 RAB11BQ15907 218 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 ZNF561Q8N587 486 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 TMEM185AQ8NFB2 350 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 ST8SIA4Q92187 359 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 FAM46BQ96A09 425 aa18.39■□□□□ 0.53
SHMT1-203ENST00000354098 A8MXK9 166 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 SIRPB1O00241 398 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 FOXH1O75593 365 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 CRTAPO75718 401 aaPredicted RBP18.38■□□□□ 0.53
SHMT1-203ENST00000354098 OR2H2O95918 312 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 CHRM2P08172 466 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 GTF2F2P13984 249 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 Q6P435 159 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 OR51D1Q8NGF3 324 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 GHRLQ9UBU3 117 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 SLC25A10Q9UBX3 287 aaPredicted RBP18.38■□□□□ 0.53
SHMT1-203ENST00000354098 STEAP1Q9UHE8 339 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 CSPG4Q6UVK1 2322 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 TMEM82A0PJX8 343 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 SH2D1BO14796 132 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 ZNF737O75373 536 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 UBBP0CG47 229 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 SLC2A2P11168 524 aaPredicted RBP18.38■□□□□ 0.53
SHMT1-203ENST00000354098 NPY4RP50391 375 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 RBM11P57052 281 aaKnown RBP18.38■□□□□ 0.53
SHMT1-203ENST00000354098 QRFPP83859 136 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 CTF1Q16619 201 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 LRRC10Q5BKY1 277 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 ASCC1Q8N9N2 400 aaKnown RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms