RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 NCOR2Q9Y618 2525 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 TCRBV16S1A1N1A0A5B0 115 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 SHISA8B8ZZ34 492 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 P2RY10O00398 339 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 CAV2P51636 162 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 HMGA2P52926 109 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 NUTF2P61970 127 aaKnown RBP4.45□□□□□ -1.7
SCN1A-218ENST00000640036 SSX7Q7RTT5 188 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 PELI1Q96FA3 418 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 TUBGCP6Q96RT7 1819 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 TRBV5-4A0A0C4DH59 114 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF705GA8MUZ8 300 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-218ENST00000640036 M0R143 59 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 PHOX2AO14813 284 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 GPRIN2O60269 458 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 CDRT1O95170 752 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 ETHE1O95571 254 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 EPPINO95925 133 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 CALCRP30988 508 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 GPM6AP51674 278 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 YBX1P67809 324 aaKnown RBP4.45□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF816Q0VGE8 651 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-218ENST00000640036 FAM106AQ4KMX7 169 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 TEX261Q6UWH6 196 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 DHRS11Q6UWP2 260 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 SLC16A12Q6ZSM3 486 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 VSTM2AQ8TAG5 236 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 BIRC8Q96P09 236 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 GPR78Q96P69 363 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 NMNAT3Q96T66 252 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 SOX7Q9BT81 388 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 ZDHHC11Q9H8X9 412 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 NTN4Q9HB63 628 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 GP6Q9HCN6 339 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 NUBP2Q9Y5Y2 271 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 URGCP-MRPS24S4R325 110 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 U3KQ87 197 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 B4DSR2 109 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 SOX15O60248 233 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 RPS4Y1P22090 263 aaKnown RBP4.45□□□□□ -1.7
SCN1A-218ENST00000640036 CSF2RBP32927 897 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 LOXL3P58215 753 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 GABARAPL2P60520 117 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 SUMO1P63165 101 aaKnown RBP4.45□□□□□ -1.7
SCN1A-218ENST00000640036 TNK1Q13470 666 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 ENDOGQ14249 297 aaKnown RBP4.45□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF343Q6P1L6 599 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 SLC16A13Q7RTY0 426 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 COMMD1Q8N668 190 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 SAMD12Q8N8I0 201 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 UQCC2Q9BRT2 126 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 ATG101Q9BSB4 218 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 NMES1Q9C002 83 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 WDR61Q9GZS3 305 aaKnown RBP4.45□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF256Q9Y2P7 627 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF281Q9Y2X9 895 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 DSCAMO60469 2012 aa4.45□□□□□ -1.7
SCN1A-218ENST00000640036 TCRBV4S1A1TA0A5B7 111 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 KCNAB3O43448 404 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 HPRP00739 348 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 TRAPPC2P0DI81 140 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 TRAPPC2BP0DI82 140 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 CTRB1P17538 263 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 TNFSF8P32971 234 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 CTRB2Q6GPI1 263 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 ETFRF1Q6IPR1 90 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 GLRX5Q86SX6 157 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 ADAMTS17Q8TE56 1095 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 PAQR8Q8TEZ7 354 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 APH1BQ8WW43 257 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 RAB40AQ8WXH6 277 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 MYEOVQ96EZ4 313 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 EBF4Q9BQW3 602 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 PLEKHA2Q9HB19 425 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 RPS10P5Q9NQ39 176 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 RABAC1Q9UI14 185 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 MYO9AB2RTY4 2548 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 PRSS37A4D1T9 235 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 ZFP92A6NM28 416 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF736B4DX44 427 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 SDCBPO00560 298 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 TMEM33P57088 247 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 CD83Q01151 205 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 RPL18Q07020 188 aaKnown RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 PRDX4Q13162 271 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 EIF4EBP2Q13542 120 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-218ENST00000640036 GPNMBQ14956 572 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 SPHARQ15513 63 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 ECSCRQ19T08 205 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 SPRED3Q2MJR0 410 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 PCSK4Q6UW60 755 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 IL34Q6ZMJ4 242 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 TGIF2LYQ8IUE0 185 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 TGIF2LXQ8IUE1 241 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 SLC7A6Q92536 515 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 MRAP2Q96G30 205 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 COL4A5P29400 1685 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 EREGO14944 169 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 CLDN1O95832 211 aa4.44□□□□□ -1.7
SCN1A-218ENST00000640036 G6PCP35575 357 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms