RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 LRP12Q9Y561 859 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MRPL33O75394 65 aaKnown RBP9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ACTL6AO96019 429 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 IFNA1P01562 189 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 GABREP78334 506 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF345Q14585 488 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CST9LP1Q5W188 147 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC16A14Q7RTX9 510 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ASB17Q8WXJ9 295 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ATG101Q9BSB4 218 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SLC35B3Q9H1N7 401 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PATZ1Q9HBE1 687 aaKnown RBP9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 DOK5Q9P104 306 aa9.52□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OBSL1O75147 1896 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MED19A0JLT2 244 aaPredicted RBP9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 A6NIZ1 184 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 HNF1AP20823 631 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CDX1P47902 265 aaPredicted RBP9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CLDN15P56746 228 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 RAP1BP61224 184 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 RAB11AP62491 216 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 NHLH2Q02577 135 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MICBQ29980 383 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TEX30Q5JUR7 227 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 JMJD6Q6NYC1 403 aaPredicted RBP9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 BRICD5Q6PL45 260 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 KMT5CQ86Y97 462 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SULF2Q8IWU5 870 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ADIPOR1Q96A54 375 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF426Q9BUY5 554 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SAMD10Q9BYL1 202 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM9BQ9NQ34 198 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 EHFQ9NZC4 300 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 RCC2Q9P258 522 aaKnown RBP9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 B4GALT7Q9UBV7 327 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 V9GYS6 101 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 KIAA1671Q9BY89 1806 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PIEZO1Q92508 2521 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TRAV8-7A0A075B6U6 113 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF850A8MQ14 1090 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PPP5D1E7EU14 171 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 GALNSP34059 522 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 APOBEC1P41238 236 aaKnown RBP9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 FXYD4P59646 89 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 RPL19P84098 196 aaKnown RBP9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 FOXO1Q12778 655 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CLEC12BQ2HXU8 276 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF468Q5VIY5 522 aaPredicted RBP9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM68Q96MH6 324 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ICAM5Q9UMF0 924 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TLN1Q9Y490 2541 aaKnown RBP9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PPA1Q15181 289 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CEBPEQ15744 281 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 C2orf68Q2NKX9 166 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM255AQ5JRV8 349 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF813Q6ZN06 617 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ANGPTL5Q86XS5 388 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF611Q8N823 705 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 APCDD1LQ8NCL9 501 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CT55Q8WUE5 264 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TXN2Q99757 166 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 GPR84Q9NQS5 396 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 FRRS1LQ9P0K9 344 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MOKQ9UQ07 419 aa9.51□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ELOA3CA0A087WX78 387 aaPredicted RBP9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CCDC163A0A0D9SF12 145 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 LMX1BO60663 402 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF205O95201 554 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ITGB2P05107 769 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 HERV-K104P61576 105 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MFAP5Q13361 173 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OR4D6Q8NGJ1 314 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 OR51T1Q8NGJ9 327 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZNF524Q96C55 264 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 SNX22Q96L94 193 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TCFL5Q9UL49 500 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ZMIZ1Q9ULJ6 1067 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CARHSP1Q9Y2V2 147 aaKnown RBP9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 INTS1Q8N201 2190 aaKnown RBP9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 UBE2CO00762 179 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ANGPTL7O43827 346 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MT-ATP6P00846 226 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CST2P09228 141 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 HOXC12P31275 282 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 MFGE8Q08431 387 aaPredicted RBP9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 ETV3LQ6ZN32 361 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 FAM219AQ8IW50 185 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 COMMD1Q8N668 190 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 TMEM104Q8NE00 496 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 LIN37Q96GY3 246 aaPredicted RBP9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 HIST1H2AAQ96QV6 131 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 NXT1Q9UKK6 140 aaKnown RBP9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 C5orf52A6NGY3 159 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PRR19A6NJB7 356 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 NPIPB9F8W1W9 429 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 PLPP3O14495 311 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 CRHP06850 196 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 H2AFB1P0C5Y9 115 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 FCGR2AP12318 317 aa9.5□□□□□ -0.89
MSH5-SAPCD1-207ENST00000493662 HRH1P35367 487 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms