RNA–Protein interactions for RNA: ENST00000483546.1

RPP40-206, Transcript of ribonuclease P/MRP subunit p40, human

TSL 3

Gene RPP40, Length 654 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RPP40-206	ENST00000483546	LIPF	P07098	398 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	CEL	P19835	753 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	RAB3A	P20336	220 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	GABARAPL2	P60520	117 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	ERVK11-1	P61568	191 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	IL13RA1	P78552	427 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	HOXA4	Q00056	320 aa	Predicted RBP	12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	SCGB2A2	Q13296	93 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	GPR50	Q13585	617 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	ZNF529	Q6P280	563 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	FAHD2B	Q6P2I3	314 aa	Predicted RBP	12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	BTNL3	Q6UXE8	466 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	ACP7	Q6ZNF0	438 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	ZNF788	Q6ZQV5	615 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	RAB40A	Q8WXH6	277 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	FAHD2A	Q96GK7	314 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	CEP19	Q96LK0	163 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	YTHDF1	Q9BYJ9	559 aa	Known RBP	12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	LSM2	Q9Y333	95 aa	Known RBP	12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	INSIG2	Q9Y5U4	225 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	NAV3	Q8IVL0	2385 aa		12.99	□□□□□ -0.33
RPP40-206	ENST00000483546	IGHV2-70D	A0A0C4DH43	119 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	TRAPPC2L	H3BP13	241 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	MAGEB3	O15480	346 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	NDUFB3	O43676	98 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	ENSA	O43768	121 aa	Known RBP	12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	PPIAL4G	P0DN37	164 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	MAPK3	P27361	379 aa	Predicted RBP	12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	SOX2	P48431	317 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	PPP3R1	P63098	170 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	PAX2	Q02962	417 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	LRRC10	Q5BKY1	277 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	FIP1L1	Q6UN15	594 aa	Known RBP	12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	SLC25A26	Q70HW3	274 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	ANGPTL5	Q86XS5	388 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	SAXO1	Q8IYX7	474 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	MS4A15	Q8N5U1	240 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	DACT3	Q96B18	629 aa	Predicted RBP	12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	SDSL	Q96GA7	329 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	CCL13	Q99616	98 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	MRI1	Q9BV20	369 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	TMPRSS13	Q9BYE2	586 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	C7orf69	Q9H7B7	122 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	SEBOX	Q9HB31	216 aa	Predicted RBP	12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	ISYNA1	Q9NPH2	558 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	CKLF	Q9UBR5	152 aa		12.98	□□□□□ -0.33
RPP40-206	ENST00000483546	ANK3	Q12955	4377 aa	Known RBP	12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	LOC105371242	A0A075B767	164 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	KIR2DS1	A0A191URI9	304 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	DVL1	O14640	695 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	SIGLEC5	O15389	551 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	GPX5	O75715	221 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	KNG1	P01042	644 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	ALDOB	P05062	364 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	HCK	P08631	526 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	PSG2	P11465	335 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	SRD5A1	P18405	259 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	EEF1B2	P24534	225 aa	Known RBP	12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	GMFB	P60983	142 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	RPS11	P62280	158 aa	Known RBP eCLIP	12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	PDZK1IP1	Q13113	114 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	MED22	Q15528	200 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	TBCE	Q15813	527 aa	Predicted RBP	12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	ZFP41	Q8N8Y5	198 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	PNLDC1	Q8NA58	520 aa	Known RBP	12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	SEH1L	Q96EE3	360 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	POM121	Q96HA1	1249 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	CCDC90B	Q9GZT6	254 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	TMEM138	Q9NPI0	162 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	MMP26	Q9NRE1	261 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	SNTG1	Q9NSN8	517 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	MTCH1	Q9NZJ7	389 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	ZNF222	Q9UK12	451 aa		12.97	□□□□□ -0.33
RPP40-206	ENST00000483546	NF1	P21359	2839 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	IGKV1D-17	A0A075B6S4	117 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	IFNA2	P01563	188 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	FST	P19883	344 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	AMY2B	P19961	511 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	SRP14	P37108	136 aa	Known RBP	12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	POU3F4	P49335	361 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	CAV3	P56539	151 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	PAX8	Q06710	450 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	KISS1	Q15726	138 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	ZNF561	Q8N587	486 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	OR5T2	Q8NGG2	359 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	SGCD	Q92629	289 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	GAFA1	Q96PS6	74 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	OR5M11	Q96RB7	305 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	NUDT16L1	Q9BRJ7	211 aa	Known RBP	12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	SMURF1	Q9HCE7	757 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	TAS2R4	Q9NYW5	299 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	AUP1	Q9Y679	476 aa		12.96	□□□□□ -0.33
RPP40-206	ENST00000483546	TRBV5-7	A0A0A0MS05	114 aa		12.95	□□□□□ -0.34
RPP40-206	ENST00000483546	RFPL4A	A6NLU0	287 aa		12.95	□□□□□ -0.34
RPP40-206	ENST00000483546	ZNF879	B4DU55	563 aa		12.95	□□□□□ -0.34
RPP40-206	ENST00000483546	RFPL4AL1	F8VTS6	287 aa		12.95	□□□□□ -0.34
RPP40-206	ENST00000483546	PLAT	P00750	562 aa		12.95	□□□□□ -0.34
RPP40-206	ENST00000483546	GABRA2	P47869	451 aa		12.95	□□□□□ -0.34
RPP40-206	ENST00000483546	BMX	P51813	675 aa		12.95	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms