RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 DYNLL1P63167 89 aaKnown RBP3.28□□□□□ -1.88
BRCA1-204ENST00000412061 ARG2P78540 354 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 PRDX1Q06830 199 aaKnown RBP3.28□□□□□ -1.88
BRCA1-204ENST00000412061 HERPUD1Q15011 391 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 LPAL2Q16609 132 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 SMUG1Q53HV7 270 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 MARC1Q5VT66 337 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 KCTD16Q68DU8 428 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 LAMTOR1Q6IAA8 161 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 SPOPLQ6IQ16 392 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 XKRXQ6PP77 449 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 NCCRP1Q6ZVX7 275 aaPredicted RBP3.28□□□□□ -1.88
BRCA1-204ENST00000412061 KLHL30-AS1Q8NEE0 82 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 RXFP4Q8TDU9 374 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 CASTOR1Q8WTX7 329 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 TLCD1Q96CP7 247 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 OPTNQ96CV9 577 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 TMEM243Q9BU79 118 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 PAXXQ9BUH6 204 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 MS4A6AQ9H2W1 248 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 MAP1LC3AQ9H492 121 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 SLC2A9Q9NRM0 540 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 TRAPPC4Q9Y296 219 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 ALG5Q9Y673 324 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 ZFYVE9O95405 1425 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 RIMS2Q9UQ26 1411 aa3.28□□□□□ -1.88
BRCA1-204ENST00000412061 A0A087WWV3 80 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 METTL15A6NJ78 407 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 PSPHP1O15172 72 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 NPIPB7O75200 414 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 REM1O75628 298 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 SUPT7LO94864 414 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 HSPB1P04792 205 aaKnown RBP3.27□□□□□ -1.89
BRCA1-204ENST00000412061 IFNA16P05015 189 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 ATF1P18846 271 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 TAC1P20366 129 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 PSMA1P25786 263 aaKnown RBP3.27□□□□□ -1.89
BRCA1-204ENST00000412061 RBMXP38159 391 aaKnown RBP3.27□□□□□ -1.89
BRCA1-204ENST00000412061 CYB561P49447 251 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 PPOXP50336 477 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 SYNJ2BPP57105 145 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 HBG1P69891 147 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 HBG2P69892 147 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 SMAGPQ0VAQ4 97 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 FAM53BQ14153 422 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 PDK2Q15119 407 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 HIGD2BQ4VC39 106 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 C6orf99Q4VX62 202 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 AKIRIN2Q53H80 203 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 RTL4Q6ZR62 310 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 PRSS58Q8IYP2 241 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 OR1M1Q8NGA1 313 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 HAVCR2Q8TDQ0 301 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 FAM222BQ8WU58 562 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 SMIM12Q96EX1 92 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 SMIM8Q96KF7 97 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 PRAP1Q96NZ9 151 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 BIRC8Q96P09 236 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 QKIQ96PU8 341 aaKnown RBP eCLIP3.27□□□□□ -1.89
BRCA1-204ENST00000412061 EMC6Q9BV81 110 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 SFXN3Q9BWM7 321 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 SLC25A39Q9BZJ4 359 aaPredicted RBP3.27□□□□□ -1.89
BRCA1-204ENST00000412061 SLC22A4Q9H015 551 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 TPK1Q9H3S4 243 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 ADGRL3Q9HAR2 1447 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 PDS5BQ9NTI5 1447 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 DEC1Q9P2X7 70 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 SNAPC4Q5SXM2 1469 aa3.27□□□□□ -1.89
BRCA1-204ENST00000412061 E5RI56 91 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 TAAR5O14804 337 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 STX10O60499 249 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 ZNF354AO60765 605 aaPredicted RBP3.26□□□□□ -1.89
BRCA1-204ENST00000412061 SPAG7O75391 227 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 GABARAPO95166 117 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 ZDHHC11BP0C7U3 371 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 FOLR2P14207 255 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 M6PRP20645 277 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 PYCR1P32322 319 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 RCVRNP35243 200 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 APLNRP35414 380 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 POLR2IP36954 125 aaKnown RBP3.26□□□□□ -1.89
BRCA1-204ENST00000412061 KIR3DL2P43630 455 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 OMPP47874 163 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 ACOT2P49753 483 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 IDH3GP51553 393 aaPredicted RBP3.26□□□□□ -1.89
BRCA1-204ENST00000412061 TIMM10P62072 90 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 POLR2GP62487 172 aaKnown RBP eCLIP3.26□□□□□ -1.89
BRCA1-204ENST00000412061 RANP62826 216 aaKnown RBP3.26□□□□□ -1.89
BRCA1-204ENST00000412061 RPL23P62829 140 aaKnown RBP3.26□□□□□ -1.89
BRCA1-204ENST00000412061 SRSF6Q13247 344 aaKnown RBP3.26□□□□□ -1.89
BRCA1-204ENST00000412061 GINS1Q14691 196 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 PMVKQ15126 192 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 KRTAP27-1Q3LI81 207 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 TMEM176BQ3YBM2 270 aaPredicted RBP3.26□□□□□ -1.89
BRCA1-204ENST00000412061 TCEAL5Q5H9L2 206 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 SPIN3Q5JUX0 258 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 CLEC12AQ5QGZ9 265 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 HES5Q5TA89 166 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 SAXO2Q658L1 398 aa3.26□□□□□ -1.89
BRCA1-204ENST00000412061 CCDC121Q6ZUS5 278 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms