RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 BTN2A1Q7KYR7 527 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 ZNF676Q8N7Q3 588 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 POC1AQ8NBT0 407 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 OR5T2Q8NGG2 359 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 OR52I1Q8NGK6 324 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 ANGPTL6Q8NI99 470 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 APH1BQ8WW43 257 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 BORCS8Q96FH0 119 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 JAM3Q9BX67 310 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 PKIBQ9C010 78 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 MS4A7Q9GZW8 240 aaPredicted RBP11.11□□□□□ -0.63
CLK3-216ENST00000564468 COMMD4Q9H0A8 199 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 WDR13Q9H1Z4 485 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 RASSF4Q9H2L5 321 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 SMURF1Q9HCE7 757 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 FGF20Q9NP95 211 aaPredicted RBP11.11□□□□□ -0.63
CLK3-216ENST00000564468 SNTG1Q9NSN8 517 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 FAM230AA0A1W2PPH8 454 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 TMEM212A6NML5 194 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 ANKRD65E5RJM6 399 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 H3BSH0 61 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 TRIM77I1YAP6 450 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 SIGLEC5O15389 551 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 WBP4O75554 376 aaKnown RBP11.1□□□□□ -0.63
CLK3-216ENST00000564468 TOX4O94842 621 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 OCM2P0CE71 109 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 OCMP0CE72 109 aaPredicted RBP11.1□□□□□ -0.63
CLK3-216ENST00000564468 PGA5P0DJD9 388 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 PRKACBP22694 351 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 MPZP25189 248 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 CAPGP40121 348 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 GABRA2P47869 451 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 ATP1B3P54709 279 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 HILS1P60008 231 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 FGF12P61328 243 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 ADARB1P78563 741 aaKnown RBP11.1□□□□□ -0.63
CLK3-216ENST00000564468 IL24Q13007 206 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 IKZF1Q13422 519 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 UBE2V2Q15819 145 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 TMPRSS11AQ6ZMR5 421 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 ACP7Q6ZNF0 438 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 UTS2BQ765I0 119 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 RDH10Q8IZV5 341 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 C8orf59Q8N0T1 100 aaPredicted RBP11.1□□□□□ -0.63
CLK3-216ENST00000564468 FAM216BQ8N7L0 139 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 DNAAF1Q8NEP3 725 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 SEH1LQ96EE3 360 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 CNTD2Q9H8S5 307 aa11.1□□□□□ -0.63
CLK3-216ENST00000564468 CHCHD3Q9NX63 227 aaKnown RBP11.1□□□□□ -0.63
CLK3-216ENST00000564468 RPUSD1Q9UJJ7 312 aaKnown RBP11.1□□□□□ -0.63
CLK3-216ENST00000564468 OR4C45A6NMZ5 311 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 SYNGR1O43759 233 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 NXPH2O95156 264 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 CLIC3O95833 236 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 CYB5AP00167 134 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 PSG2P11465 335 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 MYL12AP19105 171 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 RBP2P50120 134 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 CAV3P56539 151 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 NANOS3P60323 173 aaKnown RBP11.09□□□□□ -0.63
CLK3-216ENST00000564468 PDCD1Q15116 288 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 SMN1Q16637 294 aaKnown RBP11.09□□□□□ -0.63
CLK3-216ENST00000564468 KLF17Q5JT82 389 aaPredicted RBP11.09□□□□□ -0.63
CLK3-216ENST00000564468 GPR157Q5UAW9 335 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 CMTM4Q8IZR5 234 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 OR13C3Q8NGS6 347 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 CNIH3Q8TBE1 160 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 TRMT10AQ8TBZ6 339 aaKnown RBP11.09□□□□□ -0.63
CLK3-216ENST00000564468 RNF166Q96A37 237 aaPredicted RBP11.09□□□□□ -0.63
CLK3-216ENST00000564468 FGGYQ96C11 551 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 WDFY2Q96P53 400 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 GAFA1Q96PS6 74 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 SLC6A7Q99884 636 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 PCGF1Q9BSM1 259 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 ISG20L2Q9H9L3 353 aaKnown RBP11.09□□□□□ -0.63
CLK3-216ENST00000564468 SLC25A10Q9UBX3 287 aaPredicted RBP11.09□□□□□ -0.63
CLK3-216ENST00000564468 CAB39Q9Y376 341 aaPredicted RBP11.09□□□□□ -0.63
CLK3-216ENST00000564468 EXOSC1Q9Y3B2 195 aaKnown RBP11.09□□□□□ -0.63
CLK3-216ENST00000564468 KPTNQ9Y664 436 aa11.09□□□□□ -0.63
CLK3-216ENST00000564468 DSCAML1Q8TD84 2053 aa11.08□□□□□ -0.63
CLK3-216ENST00000564468 TRAV40A0A0B4J280 105 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 SLC1A7O00341 560 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 VENTXO95231 258 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 PLATP00750 562 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 NDUFB7P17568 137 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 ATF1P18846 271 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 AMY2BP19961 511 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 ELF3P78545 371 aaPredicted RBP11.08□□□□□ -0.64
CLK3-216ENST00000564468 SLC34A1Q06495 639 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 CCDC58Q4VC31 144 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 LHFPL2Q6ZUX7 228 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 C9orf139Q6ZV77 190 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 MKXQ8IYA7 352 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 Q8IYB0 196 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 ZNF561Q8N587 486 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 OR5AK2Q8NH90 309 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 NPRL2Q8WTW4 380 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 C22orf15Q8WYQ4 148 aa11.08□□□□□ -0.64
CLK3-216ENST00000564468 H1FXQ92522 213 aaKnown RBP11.08□□□□□ -0.64
CLK3-216ENST00000564468 SPSB1Q96BD6 273 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms