RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 GMNCA6NCL1 334 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 A6NDX4 124 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 RER1O15258 196 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 NDUFB3O43676 98 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 SPAG7O75391 227 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 IGF2P01344 180 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 ZCCHC18P0CG32 403 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 CHATP28329 748 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 ATP6V1E1P36543 226 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 GUCA1AP43080 201 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-204ENST00000549064 LUMP51884 338 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-204ENST00000549064 ECH1Q13011 328 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 GK2Q14410 553 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-204ENST00000549064 ZNF273Q14593 569 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 OR8G1Q15617 311 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 AANATQ16613 207 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 PCK2Q16822 640 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 FAM98BQ52LJ0 330 aaKnown RBP5.16□□□□□ -1.58
LIMA1-204ENST00000549064 C6orf10Q5SRN2 563 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 ASPHD1Q5U4P2 390 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 TEX36Q5VZQ5 186 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 SIGIRRQ6IA17 410 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 UNQ9370/PRO34162Q6UXP9 181 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 COLCA1Q6ZS62 124 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 C18orf65Q6ZTR6 163 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 LHFPL4Q7Z7J7 247 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 CNPY4Q8N129 248 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 OR5L1Q8NGL2 311 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 OR6T1Q8NGN1 323 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 OTULINQ96BN8 352 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 RBP7Q96R05 134 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 ZBTB18Q99592 522 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 PRSS27Q9BQR3 290 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 ADAT1Q9BUB4 502 aaKnown RBP5.16□□□□□ -1.58
LIMA1-204ENST00000549064 ZNF426Q9BUY5 554 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 ALG12Q9BV10 488 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 C20orf27Q9GZN8 174 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 TXNIPQ9H3M7 391 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 KCNK15Q9H427 330 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 PPP1R3EQ9H7J1 279 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 METTL8Q9H825 291 aaKnown RBP5.16□□□□□ -1.58
LIMA1-204ENST00000549064 ELL3Q9HB65 397 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-204ENST00000549064 THUMPD1Q9NXG2 353 aaKnown RBP5.16□□□□□ -1.58
LIMA1-204ENST00000549064 STX18Q9P2W9 335 aaKnown RBP5.16□□□□□ -1.58
LIMA1-204ENST00000549064 OR14J1Q9UGF5 321 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 PYCARDQ9ULZ3 195 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 NKX6-3A6NJ46 265 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-204ENST00000549064 M0R1W7 72 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 RAMP3O60896 148 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 SLC22A3O75751 556 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 OR7A10O76100 309 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 NDUFB4O95168 129 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 PTBP3O95758 552 aaKnown RBP5.15□□□□□ -1.59
LIMA1-204ENST00000549064 BPGMP07738 259 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 VPREB1P12018 145 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 NR2C1P13056 603 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 ANOS1P23352 680 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 COX7A1P24310 79 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 CASQ1P31415 396 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 THBS3P49746 956 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 CAPZA1P52907 286 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 GMFBP60983 142 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 RPL27P61353 136 aaKnown RBP5.15□□□□□ -1.59
LIMA1-204ENST00000549064 CDK6Q00534 326 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 IL5RAQ01344 420 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 SCN1BQ07699 218 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 FADDQ13158 208 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 GCNT6Q5T4J0 391 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 REEP3Q6NUK4 255 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 SLC36A1Q7Z2H8 476 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 CCDC190Q86UF4 302 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 NAA40Q86UY6 237 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 MKXQ8IYA7 352 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 GPR32P1Q8NGA4 272 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 OR5T2Q8NGG2 359 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 LRRC29Q8WV35 223 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 ACOT11Q8WXI4 607 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-204ENST00000549064 SLCO4A1Q96BD0 722 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 SGTBQ96EQ0 304 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 DUS3LQ96G46 650 aaKnown RBP5.15□□□□□ -1.59
LIMA1-204ENST00000549064 PKNOX2Q96KN3 472 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 MCRIP2Q9BUT9 160 aaKnown RBP5.15□□□□□ -1.59
LIMA1-204ENST00000549064 HCAR1Q9BXC0 346 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 KCNK7Q9Y2U2 307 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 NDUFAF1Q9Y375 327 aa5.15□□□□□ -1.59
LIMA1-204ENST00000549064 TRAPPC13A5PLN9 417 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 PRORSD1PA6NEY8 169 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 SDHDO14521 159 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 MT-ND1P03886 318 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 IL6P05231 212 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 TSPAN19P0C672 248 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 CTLA4P16410 223 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 TGM4P49221 684 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 GSK3BP49841 420 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 CSNK2BP67870 215 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 AQP6Q13520 282 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 DUSP7Q16829 419 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 DGUOKQ16854 277 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 MICBQ29980 383 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms