RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ECH1Q13011 328 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 RSU1Q15404 277 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 IGFBP7Q16270 282 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 LPAL2Q16609 132 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 GGNBP1Q5YKI7 109 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 FAHD2BQ6P2I3 314 aaPredicted RBP13.13□□□□□ -0.31
USP28-214ENST00000545540 POC1AQ8NBT0 407 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 FAHD2AQ96GK7 314 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 SMOC1Q9H4F8 434 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 AK3Q9UIJ7 227 aa13.13□□□□□ -0.31
USP28-214ENST00000545540 DCHS1Q96JQ0 3298 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 TRAPPC6AO75865 159 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 DHRS3O75911 302 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 CD63P08962 238 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 SFTA3P0C7M3 94 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 SPP1P10451 314 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 RPL12P30050 165 aaKnown RBP13.12□□□□□ -0.31
USP28-214ENST00000545540 SUMO3P55854 103 aaPredicted RBP13.12□□□□□ -0.31
USP28-214ENST00000545540 GJC3Q8NFK1 279 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 SULT4A1Q9BR01 284 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 UBE2ZQ9H832 354 aaPredicted RBP13.12□□□□□ -0.31
USP28-214ENST00000545540 RAB18Q9NP72 206 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 P4HTMQ9NXG6 502 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 DKKL1Q9UK85 242 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 PRR14LQ5THK1 2151 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 CACNA1DQ01668 2161 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 EXPH5Q8NEV8 1989 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 K7EPK0 472 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 DHHO43323 396 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 CRYBA1P05813 215 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 ITGA3P26006 1051 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 CYCSP99999 105 aaKnown RBP13.12□□□□□ -0.31
USP28-214ENST00000545540 Q6ZRG5 221 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 Q7L0L9 218 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 LHFPL1Q86WI0 220 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 IQCF2Q8IXL9 164 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 FAM71E2Q8N5Q1 922 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 HSD17B11Q8NBQ5 300 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 OR5T2Q8NGG2 359 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 STOML3Q8TAV4 291 aa13.12□□□□□ -0.31
USP28-214ENST00000545540 RP1L1Q8IWN7 2480 aaPredicted RBP13.12□□□□□ -0.31
USP28-214ENST00000545540 CCDC187A0A096LP49 1063 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 LY6G6EA0A0G2JKS1 128 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 IFNA2P01563 188 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 OR5AC1P0C628 307 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 OMGP23515 440 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 HFEQ30201 348 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 RXFP4Q8TDU9 374 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 ASB13Q8WXK3 278 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 NELFAQ9H3P2 528 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 U3KQA8 63 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 KIAA2026Q5HYC2 2103 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 ZIC3O60481 467 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 DUSP1P28562 367 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 OR9K2Q8NGE7 335 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 SH3BGRL3Q9H299 93 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 ESRP2Q9H6T0 727 aaKnown RBP13.11□□□□□ -0.31
USP28-214ENST00000545540 RFPL3SP0C7P2 107 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 CEBPGP53567 150 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 SLC35A1P78382 337 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 PJVKQ0ZLH3 352 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 HLA-BQ31612 363 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 RPUSD3Q6P087 351 aaKnown RBP13.11□□□□□ -0.31
USP28-214ENST00000545540 LINC00518Q8N0U6 118 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 FBXL14Q8N1E6 418 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 FNDC9Q8TBE3 224 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 NABP1Q96AH0 204 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 PADI1Q9ULC6 663 aa13.11□□□□□ -0.31
USP28-214ENST00000545540 RNASEK-C17orf49H0YIS7 233 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 MPZP25189 248 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 CXCL12P48061 93 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 GRB2P62993 217 aaKnown RBP13.1□□□□□ -0.31
USP28-214ENST00000545540 NHLH2Q02577 135 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 ZNF385CQ66K41 422 aaPredicted RBP13.1□□□□□ -0.31
USP28-214ENST00000545540 PIGCQ92535 297 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 NRIP2Q9BQI9 281 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 FIGNL2A6NMB9 653 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 MSX1P28360 303 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 SRYQ05066 204 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 HIST3H3Q16695 136 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 SPAG16Q8N0X2 631 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 ZIC4Q8N9L1 334 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 OR52M1Q8NGK5 317 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 OR10Z1Q8NGY1 313 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 PARPBPQ9NWS1 579 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 IGKV1-12A0A0C4DH73 117 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 RAB19A4D1S5 217 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 IGKV1D-12P01611 117 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 TBPP20226 339 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 CPT2P23786 658 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 ADH6P28332 368 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 PCOLCEQ15113 449 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 SLC22A25Q6T423 547 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 DHRS11Q6UWP2 260 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 PEG10Q86TG7 708 aaKnown RBP13.1□□□□□ -0.31
USP28-214ENST00000545540 MYPOPQ86VE0 399 aaPredicted RBP13.1□□□□□ -0.31
USP28-214ENST00000545540 SGPP2Q8IWX5 399 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 TDHQ8IZJ6 230 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 OR6S1Q8NH40 331 aa13.1□□□□□ -0.31
USP28-214ENST00000545540 HAS2Q92819 552 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms