RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	MFSD8	Q8NHS3	518 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268		A6NLC8	198 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268		E9PLN8	166 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	TM4SF5	O14894	197 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	LDLRAD4	O15165	306 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	TCAP	O15273	167 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	ZNF735	P0CB33	412 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	CCL3	P10147	92 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	PGAM2	P15259	253 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	GNB3	P16520	340 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	CFP	P27918	469 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	TAS2R19	P59542	299 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	PLPPR5	Q32ZL2	321 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	AKIRIN2	Q53H80	203 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	PYY3	Q5JQD4	70 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	ATPAF1	Q5TC12	328 aa	Predicted RBP	13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	REC114	Q7Z4M0	266 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	ADGRE4P	Q86SQ3	457 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	IL22RA1	Q8N6P7	574 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	ZNF383	Q8NA42	475 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	OR4K17	Q8NGC6	315 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	OR51E1	Q8TCB6	317 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	SLAMF9	Q96A28	289 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	NICN1	Q9BSH3	213 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	SELENOI	Q9C0D9	397 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	LHFPL6	Q9Y693	200 aa		13.16	□□□□□ -0.3
CHFR-223	ENST00000544268	IGLV3-32	A0A0A0MS00	114 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268		A0A1W2PP11	408 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	RER1	O15258	196 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	KCNAB3	O43448	404 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	SERPINA7	P05543	415 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	ACTB	P60709	375 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	ACTG1	P63261	375 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	TGIF1	Q15583	401 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	HMGN3	Q15651	99 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	THEM4	Q5T1C6	240 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	DTX1	Q86Y01	620 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	OR13C8	Q8NGS7	320 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	RNASE11	Q8TAA1	199 aa	Known RBP	13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	ADAMTS17	Q8TE56	1095 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	RNF133	Q8WVZ7	376 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	ST8SIA1	Q92185	356 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	MRGPRF	Q96AM1	343 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	SMIM8	Q96KF7	97 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	OR5B2	Q96R09	309 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	NCOR1P1	Q9H4R4	102 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	CYTL1	Q9NRR1	136 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	GDF2	Q9UK05	429 aa	Predicted RBP	13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	HSPB2	A8KAH6	182 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	PROB1	E7EW31	1015 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	HOXB5	P09067	269 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	FST	P19883	344 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	HOXA5	P20719	270 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	APOBEC1	P41238	236 aa	Known RBP	13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	DAP3	P51398	398 aa	Known RBP	13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	NOVA1	P51513	510 aa	Known RBP	13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	HSPB2	Q16082	182 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	PCK2	Q16822	640 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	KRBOX4	Q5JUW0	171 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	NCMAP	Q5T1S8	102 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	CHST4	Q8NCG5	386 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	OR2M3	Q8NG83	312 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	PBOV1	Q9GZY1	135 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	KPTN	Q9Y664	436 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	PTPRB	P23467	1997 aa		13.15	□□□□□ -0.3
CHFR-223	ENST00000544268	NCOA6	Q14686	2063 aa	Predicted RBP	13.15	□□□□□ -0.31
CHFR-223	ENST00000544268	METTL21EP	A6NDL7	271 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	CDRT15L2	A8MXV6	281 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	HLA-A	P01891	365 aa	Known RBP	13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	MSX1	P28360	303 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	AKR1C3	P42330	323 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	FJX1	Q86VR8	437 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	TMEM229B	Q8NBD8	167 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	PSMF1	Q92530	271 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	FOXRED1	Q96CU9	486 aa	Predicted RBP	13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	DDIT4L	Q96D03	193 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	RHOV	Q96L33	236 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	SULT4A1	Q9BR01	284 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	PROK2	Q9HC23	129 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	SH2D2A	Q9NP31	389 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	GFOD1	Q9NXC2	390 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	KLHL13	Q9P2N7	655 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	ARID1A	O14497	2285 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	IGHV3-15	A0A0B4J1V0	119 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	RAB27B	O00194	218 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	SYT7	O43581	403 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	CEACAM1	P13688	526 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	ZNF41	P51814	821 aa	Predicted RBP	13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	ZP4	Q12836	540 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	DHRS11	Q6UWP2	260 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	COMMD2	Q86X83	199 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	BPIFB2	Q8N4F0	458 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	THOC3	Q96J01	351 aa	Known RBP	13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	MRPL13	Q9BYD1	178 aa	Known RBP	13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	VSIG4	Q9Y279	399 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	POMT1	Q9Y6A1	747 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	MED13	Q9UHV7	2174 aa		13.14	□□□□□ -0.31
CHFR-223	ENST00000544268	TRBV6-7	A0A0A0MS04	114 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268		A0A0B4J2A0	478 aa		13.13	□□□□□ -0.31
CHFR-223	ENST00000544268		A6NIZ1	184 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms