RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 GLT8D1Q68CQ7 371 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 ASPHD2Q6ICH7 369 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 SFXN4Q6P4A7 337 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 CROCCP3Q8IVE0 287 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 JAGN1Q8N5M9 183 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.28□□□□□ -0.76
PTPRF-208ENST00000437607 LINC01356Q8N9X3 169 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 OR51A2Q8NGJ7 313 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 DYNC2LI1Q8TCX1 351 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 NEU4Q8WWR8 484 aaPredicted RBP10.28□□□□□ -0.76
PTPRF-208ENST00000437607 PIGCQ92535 297 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 AP3S1Q92572 193 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 HPS1Q92902 700 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 MRPL24Q96A35 216 aaKnown RBP10.28□□□□□ -0.76
PTPRF-208ENST00000437607 SLC25A46Q96AG3 418 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 HAVCR1Q96D42 359 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 SYT3Q9BQG1 590 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 SLC22A4Q9H015 551 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 TPK1Q9H3S4 243 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 PLGRKTQ9HBL7 147 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 CGGBP1Q9UFW8 167 aaPredicted RBP10.28□□□□□ -0.76
PTPRF-208ENST00000437607 SLC7A11Q9UPY5 501 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 RHBDD3Q9Y3P4 386 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 MPC1Q9Y5U8 109 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 TANC2Q9HCD6 1990 aa10.28□□□□□ -0.76
PTPRF-208ENST00000437607 PLSCR5A0PG75 271 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 ZNF850A8MQ14 1090 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 GMDSO60547 372 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 NCR1O76036 304 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 CST4P01036 141 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 ZNF250P15622 560 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 ZNF182P17025 639 aaPredicted RBP10.27□□□□□ -0.77
PTPRF-208ENST00000437607 RANBP1P43487 201 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 RORCP51449 518 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 OR10A3P58181 314 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 MOGQ16653 247 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 NKPD1Q17RQ9 610 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 TMEM42Q69YG0 159 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 LHFPL2Q6ZUX7 228 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 MOB3CQ70IA8 216 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 LRRTM1Q86UE6 522 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 PNLDC1Q8NA58 520 aaKnown RBP10.27□□□□□ -0.77
PTPRF-208ENST00000437607 DNAAF1Q8NEP3 725 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 OR8G5Q8NG78 346 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 OR8S1Q8NH09 359 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 TRMT10AQ8TBZ6 339 aaKnown RBP10.27□□□□□ -0.77
PTPRF-208ENST00000437607 BORCS8Q96FH0 119 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 HIST1H2AAQ96QV6 131 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 GPER1Q99527 375 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 RTL8AQ9BWD3 113 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 METTL17Q9H7H0 456 aaPredicted RBP10.27□□□□□ -0.77
PTPRF-208ENST00000437607 DUSP13Q9UII6 198 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 AK6Q9Y3D8 172 aaKnown RBP10.27□□□□□ -0.77
PTPRF-208ENST00000437607 V9GY05 133 aa10.27□□□□□ -0.77
PTPRF-208ENST00000437607 IGLV3-9A0A075B6K5 115 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 AIPO00170 330 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 VENTXO95231 258 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 ADRA2CP18825 462 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 CA6P23280 308 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 RPS19P39019 145 aaKnown RBP10.26□□□□□ -0.77
PTPRF-208ENST00000437607 CAV3P56539 151 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 OR8G1Q15617 311 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 RAB11BQ15907 218 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 ZNF529Q6P280 563 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 OR6M1Q8NGM8 313 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 DVL3Q92997 716 aaPredicted RBP10.26□□□□□ -0.77
PTPRF-208ENST00000437607 FOXRED1Q96CU9 486 aaPredicted RBP10.26□□□□□ -0.77
PTPRF-208ENST00000437607 MICU1Q9BPX6 476 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 MRPL37Q9BZE1 423 aaKnown RBP10.26□□□□□ -0.77
PTPRF-208ENST00000437607 CYSLTR2Q9NS75 346 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 NKIRAS2Q9NYR9 191 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 DAPK2Q9UIK4 370 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 MGAM2Q2M2H8 2515 aa10.26□□□□□ -0.77
PTPRF-208ENST00000437607 IGKV1-9A0A0C4DH69 117 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 A0A0G2JK05 382 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 FAM230AA0A1W2PPH8 454 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 OR5B21A6NL26 309 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 WIPF1O43516 503 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 ALX3O95076 343 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 IGHV3-13P01766 116 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 CFPP27918 469 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 ZNF93P35789 620 aaPredicted RBP10.25□□□□□ -0.77
PTPRF-208ENST00000437607 SRP14P37108 136 aaKnown RBP10.25□□□□□ -0.77
PTPRF-208ENST00000437607 FUT6P51993 359 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 ATP1B3P54709 279 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 DVL1P1P54792 670 aaPredicted RBP10.25□□□□□ -0.77
PTPRF-208ENST00000437607 MZT1Q08AG7 82 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 UBE2V2Q15819 145 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 IDNKQ5T6J7 187 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 HES5Q5TA89 166 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 OR10AD1Q8NGE0 317 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 OR52N4Q8NGI2 321 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 MCFD2Q8NI22 146 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 ZNF671Q8TAW3 534 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 HPSE2Q8WWQ2 592 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 KCTD12Q96CX2 325 aaKnown RBP10.25□□□□□ -0.77
PTPRF-208ENST00000437607 UQCC2Q9BRT2 126 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 C6orf62Q9GZU0 229 aaPredicted RBP10.25□□□□□ -0.77
PTPRF-208ENST00000437607 SMURF1Q9HCE7 757 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 DYNLRB1Q9NP97 96 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms