RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 PRDM14Q9GZV8 571 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 OR51J1Q9H342 316 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 INPP5EQ9NRR6 644 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 TCF21O43680 179 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 GYPBP06028 91 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 PRSS3P35030 304 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 ID1P41134 155 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 HNRNPFP52597 415 aaKnown RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 HERVK_113P61574 105 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 MFGE8Q08431 387 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 EBPQ15125 230 aaKnown RBP4.47□□□□□ -1.69
SCN1A-218ENST00000640036 ACKR1Q16570 336 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 Q6ZRG5 221 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 MBOAT2Q6ZWT7 520 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 NOXO1Q8NFA2 376 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF519Q8TB69 540 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 KHSRPQ92945 711 aaKnown RBP eCLIP4.47□□□□□ -1.692e-6■■■□□ 17.2
SCN1A-218ENST00000640036 ATOH8Q96SQ7 321 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 ACKR4Q9NPB9 350 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 IGSF5Q9NSI5 407 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 NPTNQ9Y639 398 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 HIVEP3Q5T1R4 2406 aa4.47□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM218A2RU14 115 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 GPR37O15354 613 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 MMP7P09237 267 aaPredicted RBP4.46□□□□□ -1.69
SCN1A-218ENST00000640036 HIST1H1BP16401 226 aaKnown RBP4.46□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF93P35789 620 aaPredicted RBP4.46□□□□□ -1.69
SCN1A-218ENST00000640036 PSMB3P49720 205 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 HIST2H3PS2Q5TEC6 136 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 BTNL8Q6UX41 500 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF764Q96H86 408 aaPredicted RBP4.46□□□□□ -1.69
SCN1A-218ENST00000640036 Q96M85 177 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 PKMYT1Q99640 499 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 GSTO2Q9H4Y5 243 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 ACOT13Q9NPJ3 140 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 MED29Q9NX70 200 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 OR52A1Q9UKL2 312 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 PRDM4Q9UKN5 801 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 RAB27BO00194 218 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 FBXO45P0C2W1 286 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 SLC25A16P16260 332 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 CDK5Q00535 292 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 Q1RN00 199 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 ANKRD55Q3KP44 614 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 TIMM23BQ5SRD1 257 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 CDCP2Q5VXM1 449 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF788Q6ZQV5 615 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 ERASQ7Z444 233 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 GTSCR1Q86UQ5 136 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 MOGAT3Q86VF5 341 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 BAGE3Q86Y29 109 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 BAGE2Q86Y30 109 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 IGDCC3Q8IVU1 814 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 SLC22A24Q8N4F4 322 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 HMGCLL1Q8TB92 370 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 CBLN4Q9NTU7 201 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM30AQ9NV96 361 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 IL19Q9UHD0 177 aa4.46□□□□□ -1.69
SCN1A-218ENST00000640036 LAMA4Q16363 1823 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 TMEM238LA0A1B0GVL6 79 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 HMX3A6NHT5 357 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 A6NJY4 79 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 OR5B21A6NL26 309 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 FAM183AA6NL82 134 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 SLC22A5O76082 557 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 OR2T7P0C7T2 308 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 CA6P23280 308 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 PTTG1IPP53801 180 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 IL24Q13007 206 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 PABPC1L2AQ5JQF8 200 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 DRAM2Q6UX65 266 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 LYG1Q8N1E2 194 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 GDPD1Q8N9F7 314 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 OR5D18Q8NGL1 313 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 OR4F5Q8NH21 305 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 STON2Q8WXE9 905 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 PINX1Q96BK5 328 aaKnown RBP4.46□□□□□ -1.7
SCN1A-218ENST00000640036 DCSTAMPQ9H295 470 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 GPR173Q9NS66 373 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 TMEFF2Q9UIK5 374 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-218ENST00000640036 MRPS28Q9Y2Q9 187 aaKnown RBP4.46□□□□□ -1.7
SCN1A-218ENST00000640036 NKX2-6A6NCS4 301 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 ATP1B1P05026 303 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 S100A4P26447 101 aaKnown RBP4.46□□□□□ -1.7
SCN1A-218ENST00000640036 CD34P28906 385 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 WDR4P57081 412 aaKnown RBP4.46□□□□□ -1.7
SCN1A-218ENST00000640036 ELF3P78545 371 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-218ENST00000640036 EMX1Q04741 257 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-218ENST00000640036 LY6EQ16553 131 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 YIF1BQ5BJH7 314 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 ABHD3Q8WU67 409 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 BLNKQ8WV28 456 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 MUL1Q969V5 352 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 SLAMF6Q96DU3 332 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 FEVQ99581 238 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 VCX2Q9H322 139 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 SIPA1L3O60292 1781 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-218ENST00000640036 LOC102723971A0A1B0GUV8 181 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 FAM181BA6NEQ2 426 aa4.46□□□□□ -1.7
SCN1A-218ENST00000640036 TMEM229AB2RXF0 380 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms