RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 OR2AE1Q8NHA4 323 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 PIK3IP1Q96FE7 263 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 C1orf198Q9H425 327 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 SMCO4Q9NRQ5 59 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 ZNF319Q9P2F9 582 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 CARHSP1Q9Y2V2 147 aaKnown RBP12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 GNB3P16520 340 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 SERPINF1P36955 418 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 ZNF121P58317 390 aaPredicted RBP12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 ACTBP60709 375 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 ACTG1P63261 375 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 PJVKQ0ZLH3 352 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 TRIP6Q15654 476 aaKnown RBP12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 USF2Q15853 346 aaPredicted RBP12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 OR2B11Q5JQS5 317 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 ADAD2Q8NCV1 583 aaKnown RBP12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 SEH1LQ96EE3 360 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 PHYHIPLQ96FC7 376 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 IER2Q9BTL4 223 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 SEC11CQ9BY50 192 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 TGIF2Q9GZN2 237 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 PBOV1Q9GZY1 135 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 CHRNA10Q9GZZ6 450 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 B3GAT1Q9P2W7 334 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 CACNA1DQ01668 2161 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 PIEZO1Q92508 2521 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 C5orf52A6NGY3 159 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 CXCL13O43927 109 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 CD8AP01732 235 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 ARG1P05089 322 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 PI3P19957 117 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 IL11RAQ14626 422 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 CT55Q8WUE5 264 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 PIGTQ969N2 578 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 HIST1H2BAQ96A08 127 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 KCNK17Q96T54 332 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 SULT4A1Q9BR01 284 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 CNTD2Q9H8S5 307 aa12.75□□□□□ -0.37
SHROOM1-208ENST00000617339 CADP27708 2225 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 C9JQL5 133 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 RNASEK-C17orf49H0YIS7 233 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 PTGDSP41222 190 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 NOVA1P51513 510 aaKnown RBP12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 C3AR1Q16581 482 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 ISXQ2M1V0 245 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 ZNF813Q6ZN06 617 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 TIPARPQ7Z3E1 657 aaKnown RBP12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 LIPHQ8WWY8 451 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 INTS12Q96CB8 462 aaKnown RBP12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 RRNAD1Q96FB5 475 aaKnown RBP12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 LRFN5Q96NI6 719 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 CALHM2Q9HA72 323 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 GSKIPQ9P0R6 139 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 RCC2Q9P258 522 aaKnown RBP12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 CHCHD2Q9Y6H1 151 aaPredicted RBP12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 IGHV3-64DA0A0J9YX35 117 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 MSGN1A6NI15 193 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 CSNK1A1P48729 337 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 GABREP78334 506 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 ZNF345Q14585 488 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 BRICD5Q6PL45 260 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 ZNF584Q8IVC4 421 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 SECTM1Q8WVN6 248 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 PHYHIPQ92561 330 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 PGAM5Q96HS1 289 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 MMP26Q9NRE1 261 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 B3GALT5Q9Y2C3 310 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 R4GMQ9 66 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 A6NIZ1 184 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 RAP1BP61224 184 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 RAP1AP62834 184 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 PMPCAQ10713 525 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 SLC9A3R2Q15599 337 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 PHYHD1Q5SRE7 291 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 ZNF385CQ66K41 422 aaPredicted RBP12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 SLC43A2Q8N370 569 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 SEMA6DQ8NFY4 1073 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 OR13C8Q8NGS7 320 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 PHB2Q99623 299 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 MFRPQ9BY79 579 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 ULBP2Q9BZM5 246 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 TCFL5Q9UL49 500 aa12.74□□□□□ -0.37
SHROOM1-208ENST00000617339 ADAM10O14672 748 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 LRP3O75074 770 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 ERCC1P07992 297 aaPredicted RBP12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 RCC1P18754 421 aaPredicted RBP12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 S100A10P60903 97 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 RNASE10Q5GAN6 216 aaKnown RBP12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 MRPL14Q6P1L8 145 aaKnown RBP12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 LILRB2Q8N423 598 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 ASB17Q8WXJ9 295 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 S100PBPQ96BU1 408 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 MRGPRX4Q96LA9 322 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 NICN1Q9BSH3 213 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 COL4A2P08572 1712 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 A0A1B0GTI1 187 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 STMND1H3BQB6 276 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 IFI6P09912 130 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 SLC25A4P12235 298 aa12.73□□□□□ -0.37
SHROOM1-208ENST00000617339 CCL2P13500 99 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms