RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CHST5Q9GZS9 411 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 ABCB9Q9NP78 766 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 CTSZQ9UBR2 303 aa11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 LSM2Q9Y333 95 aaKnown RBP11.87□□□□□ -0.51
SHKBP1-217ENST00000598558 ABCA2Q9BZC7 2435 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 A0A1B0GW55 424 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 FAM230AA0A1W2PPH8 454 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 TMEM212A6NML5 194 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 A8MV72 311 aaPredicted RBP11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 KIAA1324LA8MWY0 1029 aaPredicted RBP11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 SRRM5B3KS81 715 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 GYPAP02724 150 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 MT-ND2P03891 347 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 CCDC159P0C7I6 412 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 DUX4L2P0CJ85 424 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 DUX4L3P0CJ86 424 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 DUX4L4P0CJ87 422 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 DUX4L5P0CJ88 424 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 DUX4L6P0CJ89 424 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 DUX4L7P0CJ90 424 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 RPS11P62280 158 aaKnown RBP eCLIP11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 CCDC58Q4VC31 144 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 RNLSQ5VYX0 342 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 TEX36Q5VZQ5 186 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 HAGHLQ6PII5 290 aaPredicted RBP11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 DUX4L9Q6RFH8 374 aaPredicted RBP11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 BATF2Q8N1L9 274 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 FGFRL1Q8N441 504 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 OR5T2Q8NGG2 359 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 OR13C3Q8NGS6 347 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 ORAI1Q96D31 301 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 PGLYRP3Q96LB9 341 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 MYCBPQ99417 103 aaPredicted RBP11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 ZNF184Q99676 751 aaPredicted RBP11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 RASSF4Q9H2L5 321 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 CHCHD3Q9NX63 227 aaKnown RBP11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 DUX4Q9UBX2 424 aa11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 YLPM1P49750 1951 aaKnown RBP11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 FN1P02751 2386 aaKnown RBP11.86□□□□□ -0.51
SHKBP1-217ENST00000598558 ABCA1O95477 2261 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 PNMA8CA0A1B0GUJ8 204 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 OOEPA6NGQ2 149 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 OR5B21A6NL26 309 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 B4DSR2 109 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 TRAPPC2LH3BP13 241 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 PHF1O43189 567 aaPredicted RBP11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 DENRO43583 198 aaKnown RBP11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 MSMBP08118 114 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 HOXB4P17483 251 aaPredicted RBP11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 ATF1P18846 271 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 HAAOP46952 286 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 SOX2P48431 317 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 WNT4P56705 351 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 LCN2P80188 198 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 UTS2BQ765I0 119 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 SPICQ8N5J4 248 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 OR10Z1Q8NGY1 313 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 GHSRQ92847 366 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 C10orf35Q96D05 121 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 PLEKHA1Q9HB21 404 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 MMP26Q9NRE1 261 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 SNTG1Q9NSN8 517 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 SCN3BQ9NY72 215 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 PCDHB10Q9UN67 800 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 TLN2Q9Y4G6 2542 aa11.85□□□□□ -0.51
SHKBP1-217ENST00000598558 F8VVB4 439 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 F8VWA3 439 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 AVPP01185 164 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 ZNF12P17014 697 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 MAP2K4P45985 399 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 DVL1P1P54792 670 aaPredicted RBP11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 PAX2Q02962 417 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 FAM166AQ6J272 317 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 C1orf229Q6ZS94 237 aaPredicted RBP11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 IL17RELQ6ZVW7 336 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 MUC20Q8N307 709 aaPredicted RBP11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 OR13C9Q8NGT0 318 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 PP6455Q8WZ26 134 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 MYDGFQ969H8 173 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 TMEM186Q96B77 213 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 RAB39BQ96DA2 213 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 SMIM19Q96E16 107 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 SPACA5Q96QH8 159 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 CCL13Q99616 98 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 COMMD4Q9H0A8 199 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 SMURF1Q9HCE7 757 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 HIF1ANQ9NWT6 349 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 TPRKBQ9Y3C4 175 aa11.84□□□□□ -0.51
SHKBP1-217ENST00000598558 TRBV5-5A0A0J9YX44 114 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 J3QT63 122 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 INMTO95050 263 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 SELLP14151 372 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 RPS2P15880 293 aaKnown RBP11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 ZNF20P17024 532 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 MPZP25189 248 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 AZGP1P25311 298 aaKnown RBP11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 FUT6P51993 359 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 MED21Q13503 144 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 CR1LQ2VPA4 569 aa11.83□□□□□ -0.52
SHKBP1-217ENST00000598558 STUMQ69YW2 141 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms