RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 TAAR5O14804 337 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 PSPHP1O15172 72 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 RNF113AO15541 343 aaKnown RBP0.96□□□□□ -2.26
USP3-209ENST00000558925 NDUFS5O43920 106 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 EIF1BO60739 113 aaKnown RBP0.96□□□□□ -2.26
USP3-209ENST00000558925 NDUFS6O75380 124 aaKnown RBP0.96□□□□□ -2.26
USP3-209ENST00000558925 UPK1BO75841 260 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 MPZL1O95297 269 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 IGKV1-39P01597 117 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 APOA1P02647 267 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 IGKV1D-39P04432 117 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 RPN2P04844 631 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 OR5AL1P0C617 328 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 CISD3P0C7P0 127 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 ZNF286BP0CG31 522 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 C1GALT1C1LP0DN25 315 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 MUC1P15941 1255 aaPredicted RBP0.96□□□□□ -2.26
USP3-209ENST00000558925 NQO2P16083 231 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 M6PRP20645 277 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 BGNP21810 368 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 NPY1RP25929 384 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 IL3RAP26951 378 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 IL12BP29460 328 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 CASQ1P31415 396 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 EIF1P41567 113 aaKnown RBP0.96□□□□□ -2.26
USP3-209ENST00000558925 RANBP1P43487 201 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 PRLHRP49683 370 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 RGS6P49758 472 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 OR12D2P58182 307 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 TAS2R60P59551 318 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 GRB2P62993 217 aaKnown RBP0.96□□□□□ -2.26
USP3-209ENST00000558925 STX4Q12846 297 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 NAB1Q13506 487 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 PMVKQ15126 192 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 CDNFQ49AH0 187 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 LUZP6Q538Z0 58 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 TTC32Q5I0X7 151 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 THOC7Q6I9Y2 204 aaKnown RBP0.96□□□□□ -2.26
USP3-209ENST00000558925 FAM71E1Q6IPT2 247 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 ZNF880Q6PDB4 577 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 COPS6Q7L5N1 327 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 LRRC8AQ8IWT6 810 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 ST13P4Q8IZP2 240 aaPredicted RBP0.96□□□□□ -2.26
USP3-209ENST00000558925 SLC7A5P1Q8MH63 180 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 CA13Q8N1Q1 262 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 GAPTQ8N292 157 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 OR2M7Q8NG81 312 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 OR4M2Q8NGB6 313 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 OR2AE1Q8NHA4 323 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 CLHC1Q8NHS4 586 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 ZNF420Q8TAQ5 688 aaPredicted RBP0.96□□□□□ -2.26
USP3-209ENST00000558925 ENKURQ8TC29 256 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 NT5CQ8TCD5 201 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 LGALS14Q8TCE9 139 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 OR5P2Q8WZ92 322 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 HGDQ93099 445 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 SLC25A46Q96AG3 418 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 CIDECQ96AQ7 238 aaPredicted RBP0.96□□□□□ -2.26
USP3-209ENST00000558925 OR10C1Q96KK4 312 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 ZNF396Q96N95 335 aaPredicted RBP0.96□□□□□ -2.26
USP3-209ENST00000558925 FOPNLQ96NB1 174 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 ZFP3Q96NJ6 502 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 PDCD1LG2Q9BQ51 273 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 TBL1YQ9BQ87 522 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 ZNF649Q9BS31 505 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 RSG1Q9BU20 258 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 SFXN3Q9BWM7 321 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 ULBP2Q9BZM5 246 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 COA1Q9GZY4 146 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 TOLLIPQ9H0E2 274 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 SYT4Q9H2B2 425 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 ACOT13Q9NPJ3 140 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 IFT46Q9NQC8 304 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 NECAP2Q9NVZ3 263 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 CYB5R1Q9UHQ9 305 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 CFAP45Q9UL16 551 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 ENPP4Q9Y6X5 453 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 AQRO60306 1485 aaKnown RBP eCLIP0.96□□□□□ -2.26
USP3-209ENST00000558925 ADAMTSL3P82987 1691 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 GPR179Q6PRD1 2367 aa0.96□□□□□ -2.26
USP3-209ENST00000558925 COL4A4P53420 1690 aaPredicted RBP0.95□□□□□ -2.26
USP3-209ENST00000558925 C7orf66A4D0T2 115 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 ISPDA4D126 451 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 RBFOX3A6NFN3 312 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 GOLGA8JA6NMD2 632 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 hCG_2039718K7EN88 272 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 MYL12BO14950 172 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 MAGEB4O15481 346 aaPredicted RBP0.95□□□□□ -2.26
USP3-209ENST00000558925 YKT6O15498 198 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 SHOX2O60902 331 aaPredicted RBP0.95□□□□□ -2.26
USP3-209ENST00000558925 ZMPSTE24O75844 475 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 RCBTB2O95199 551 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 CST4P01036 141 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 CD8AP01732 235 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 PRB2P02812 416 aaPredicted RBP0.95□□□□□ -2.26
USP3-209ENST00000558925 CD74P04233 296 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 IGKV3-11P04433 115 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 IGKV5-2P06315 115 aa0.95□□□□□ -2.26
USP3-209ENST00000558925 MMP7P09237 267 aaPredicted RBP0.95□□□□□ -2.26
USP3-209ENST00000558925 GOLGA8HP0CJ92 632 aa0.95□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms