RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 RGS19P49795 217 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 UBE2KP61086 200 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 CCL7P80098 99 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 MOGAT2Q3SYC2 334 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 ATG4DQ86TL0 474 aaPredicted RBP12.36□□□□□ -0.43
LIG1-203ENST00000536218 OR5R1Q8NH85 324 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 TERB2Q8NHR7 220 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 POC1BQ8TC44 478 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 CMKLR1Q99788 373 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 WWTR1Q9GZV5 400 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 COMMD4Q9H0A8 199 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 CGGBP1Q9UFW8 167 aaPredicted RBP12.36□□□□□ -0.43
LIG1-203ENST00000536218 TOX3O15405 576 aaPredicted RBP12.36□□□□□ -0.43
LIG1-203ENST00000536218 GDF9O60383 454 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 IL2RAP01589 272 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 CD1AP06126 327 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 TACSTD2P09758 323 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 CDKN2AP42771 156 aaKnown RBP12.36□□□□□ -0.43
LIG1-203ENST00000536218 ERVFRD-1P60508 538 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 EGR4Q05215 589 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 ISXQ2M1V0 245 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 ZNF440Q8IYI8 595 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 NPEPL1Q8NDH3 523 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 M1APQ8TC57 530 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 RXFP3Q9NSD7 469 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 KLHDC2Q9Y2U9 406 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 CXCR1P25024 350 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 GALNSP34059 522 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 HRH1P35367 487 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 SSBP1Q04837 148 aaKnown RBP12.36□□□□□ -0.43
LIG1-203ENST00000536218 ELOBQ15370 118 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 ALG10Q5BKT4 473 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 FNDC7Q5VTL7 733 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 ETFRF1Q6IPR1 90 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 DPY19L2P2Q6ZN68 376 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 AQP10Q96PS8 301 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 SLC25A31Q9H0C2 315 aa12.36□□□□□ -0.43
LIG1-203ENST00000536218 A0A1W2PQM1 296 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 DCDC2BA2VCK2 349 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 TMEM127O75204 238 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 GUSBP08236 651 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 SERPINA2P20848 420 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 CEACAM6P40199 344 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 PMPCAQ10713 525 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 ZNF74Q16587 644 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 RPUSD3Q6P087 351 aaKnown RBP12.35□□□□□ -0.43
LIG1-203ENST00000536218 TRAPPC6BQ86SZ2 158 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 BEND2Q8NDZ0 799 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 OR1N1Q8NGS0 311 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 TAAR8Q969N4 342 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 MRGPRFQ96AM1 343 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 CMBLQ96DG6 245 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 FOXN4Q96NZ1 517 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 FBXL17Q9UF56 701 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 CST4P01036 141 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 PNMTP11086 282 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 TRA2AQ13595 282 aaKnown RBP eCLIP12.35□□□□□ -0.433e-6■□□□□ 10
LIG1-203ENST00000536218 HLA-BQ31612 363 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 GLYATL3Q5SZD4 288 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 THEM4Q5T1C6 240 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 WDR74Q6RFH5 385 aaPredicted RBP12.35□□□□□ -0.43
LIG1-203ENST00000536218 LRP11Q86VZ4 500 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 GNRHR2Q96P88 292 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 LPAR4Q99677 370 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 RARRES2Q99969 163 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 MMP25Q9NPA2 562 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 EML5Q05BV3 1969 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 CELSR3Q9NYQ7 3312 aa12.35□□□□□ -0.43
LIG1-203ENST00000536218 PATE3B3GLJ2 98 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 KLK2P20151 261 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 CSRP1P21291 193 aaKnown RBP12.34□□□□□ -0.43
LIG1-203ENST00000536218 EPHA8P29322 1005 aaPredicted RBP12.34□□□□□ -0.43
LIG1-203ENST00000536218 GNALP38405 381 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 ABHD5Q8WTS1 349 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 C8orf44Q96CB5 159 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 RAB39BQ96DA2 213 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 OR10C1Q96KK4 312 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 YPEL4Q96NS1 127 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 MRM2Q9UI43 246 aaKnown RBP12.34□□□□□ -0.43
LIG1-203ENST00000536218 TMED3Q9Y3Q3 217 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 RAB27BO00194 218 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 PGA4P0DJD7 388 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 PGA5P0DJD9 388 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 PAX1P15863 534 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 PRPS1P60891 318 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 JOSD1Q15040 202 aaPredicted RBP12.34□□□□□ -0.43
LIG1-203ENST00000536218 DNLZQ5SXM8 178 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 PHF19Q5T6S3 580 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 LCN10Q6JVE6 187 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 FJX1Q86VR8 437 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 R3HDM4Q96D70 268 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 GUCD1Q96NT3 240 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 AKIRIN1Q9H9L7 192 aaPredicted RBP12.34□□□□□ -0.43
LIG1-203ENST00000536218 MED12Q93074 2177 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 SCRG1O75711 98 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 FCGR2CP31995 323 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 RPL18Q07020 188 aaKnown RBP12.34□□□□□ -0.43
LIG1-203ENST00000536218 NKAIN1Q4KMZ8 207 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 COX15Q7KZN9 410 aa12.34□□□□□ -0.43
LIG1-203ENST00000536218 APCDD1LQ8NCL9 501 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms