RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 MAP1LC3CQ9BXW4 147 aa2.69□□□□□ -1.98
CD44-223ENST00000526553 RAB1BQ9H0U4 201 aa2.69□□□□□ -1.98
CD44-223ENST00000526553 SYT4Q9H2B2 425 aa2.69□□□□□ -1.98
CD44-223ENST00000526553 TPK1Q9H3S4 243 aa2.69□□□□□ -1.98
CD44-223ENST00000526553 TMEM27Q9HBJ8 222 aa2.69□□□□□ -1.98
CD44-223ENST00000526553 CSNK1G1Q9HCP0 422 aa2.69□□□□□ -1.98
CD44-223ENST00000526553 SLC17A7Q9P2U7 560 aa2.69□□□□□ -1.98
CD44-223ENST00000526553 OR51B2Q9Y5P1 312 aa2.69□□□□□ -1.98
CD44-223ENST00000526553 TAF1LQ8IZX4 1826 aa2.69□□□□□ -1.98
CD44-223ENST00000526553 QRICH2Q9H0J4 1663 aa2.69□□□□□ -1.98
CD44-223ENST00000526553 SBF1O95248 1867 aa2.69□□□□□ -1.98
CD44-223ENST00000526553 TNS2Q63HR2 1409 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 PPIP5K1Q6PFW1 1433 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 TRPM1Q7Z4N2 1603 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 ITGB4P16144 1822 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 DNASE2O00115 360 aaPredicted RBP2.68□□□□□ -1.98
CD44-223ENST00000526553 DFFAO00273 331 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 CTNSO60931 367 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 SPAG7O75391 227 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 TRAPPC6AO75865 159 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 SLC22A5O76082 557 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 TTC4O95801 387 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 PAHP00439 452 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 GCGP01275 180 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 RHOCP08134 193 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 PSMC3P17980 439 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 HTR2CP28335 458 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 DEKP35659 375 aaKnown RBP2.68□□□□□ -1.98
CD44-223ENST00000526553 TALDO1P37837 337 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 MYCNOSP40205 109 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 RAP1AP62834 184 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 MADCAM1Q13477 382 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 USF2Q15853 346 aaPredicted RBP2.68□□□□□ -1.98
CD44-223ENST00000526553 C6orf183Q5T699 404 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 CPTPQ5TA50 214 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 OR2T5Q6IEZ7 315 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 CEMP1Q6PRD7 247 aaPredicted RBP2.68□□□□□ -1.98
CD44-223ENST00000526553 SMIM5Q71RC9 77 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 RAB43Q86YS6 212 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 RBM45Q8IUH3 476 aaKnown RBP2.68□□□□□ -1.98
CD44-223ENST00000526553 SYS1Q8N2H4 156 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 OTUD6BQ8N6M0 293 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 C15orf56Q8N910 161 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 OR2T29Q8NH02 315 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 CHID1Q9BWS9 393 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 RRAGDQ9NQL2 400 aaPredicted RBP2.68□□□□□ -1.98
CD44-223ENST00000526553 ZNF302Q9NR11 478 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 CHMP5Q9NZZ3 219 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 TBX21Q9UL17 535 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 CFL2Q9Y281 166 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 ZNF257Q9Y2Q1 563 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 V9GYY9 64 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 POLR3AO14802 1390 aaPredicted RBP2.68□□□□□ -1.98
CD44-223ENST00000526553 C5P01031 1676 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 PKD1L3Q7Z443 1732 aa2.68□□□□□ -1.98
CD44-223ENST00000526553 CPSF1Q10570 1443 aaKnown RBP2.68□□□□□ -1.98
CD44-223ENST00000526553 DENND4AQ7Z401 1863 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 ADGRB1O14514 1584 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 ADCY9O60503 1353 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 TRAV19A0A0A6YYK7 116 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 A0A1B0GVX0 72 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 A0A1W2PQ67 120 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 ANKRD20A5PA0PJZ0 165 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 RAB19A4D1S5 217 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 SEC14L6B5MCN3 397 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 NMT2O60551 498 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 ENTPD5O75356 428 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 MED6O75586 246 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 YIF1AO95070 293 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 CCL2P13500 99 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 IGFBP3P17936 291 aaPredicted RBP2.67□□□□□ -1.98
CD44-223ENST00000526553 PRKACBP22694 351 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 SPAM1P38567 509 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 GPR4P46093 362 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 ERFP50548 548 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 C18orf21Q32NC0 220 aaPredicted RBP2.67□□□□□ -1.98
CD44-223ENST00000526553 DUPD1Q68J44 220 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 CD300LGQ6UXG3 332 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 RTL4Q6ZR62 310 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 NCCRP1Q6ZVX7 275 aaPredicted RBP2.67□□□□□ -1.98
CD44-223ENST00000526553 CALHM1Q8IU99 346 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 NKAIN4Q8IVV8 208 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 ZNF561Q8N587 486 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 FAM86B1Q8N7N1 296 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 C19orf18Q8NEA5 215 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 OR6K2Q8NGY2 324 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 C15orf40Q8WUR7 153 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 PTX4Q96A99 478 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 SULT4A1Q9BR01 284 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 EMC6Q9BV81 110 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 OSBPL11Q9BXB4 747 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 ULBP2Q9BZM5 246 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 ANKHQ9HCJ1 492 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 C6orf50Q9HD87 102 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 CFAP45Q9UL16 551 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 HES2Q9Y543 173 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 SLIT3O75094 1523 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 ABCC6O95255 1503 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 BCL9O00512 1426 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 CACNA1SQ13698 1873 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms