RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 Q96MF0 132 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 MGLLQ99685 303 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 ZNF696Q9H7X3 374 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 GCM1Q9NP62 436 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 GPR173Q9NS66 373 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 TMEM106BQ9NUM4 274 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 POLDIP2Q9Y2S7 368 aa8.53□□□□□ -1.04
USP3-216ENST00000559873 LRBAP50851 2863 aa8.52□□□□□ -1.04
USP3-216ENST00000559873 TRIM64A6NGJ6 449 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 PPIHO43447 177 aaKnown RBP8.52□□□□□ -1.05
USP3-216ENST00000559873 SULT1B1O43704 296 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 CYB5AP00167 134 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 HEXAP06865 529 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 GRPP07492 148 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 CPEP16870 476 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 RAB3AP20336 220 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 GIFP27352 417 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 PSMB9P28065 219 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 SOX2P48431 317 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 RBP2P50120 134 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 GPM6AP51674 278 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 FUT6P51993 359 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 ATP1B3P54709 279 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 EMX1Q04741 257 aaPredicted RBP8.52□□□□□ -1.05
USP3-216ENST00000559873 ZNF154Q13106 437 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 TPBGQ13641 420 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 UBE2UQ5VVX9 321 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 LIPKQ5VXJ0 399 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 DNM1P46Q6ZS02 220 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 LHFPL2Q6ZUX7 228 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 MUC20Q8N307 709 aaPredicted RBP8.52□□□□□ -1.05
USP3-216ENST00000559873 PARP16Q8N5Y8 322 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 TSPAN14Q8NG11 270 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 OR1M1Q8NGA1 313 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 OR13C9Q8NGT0 318 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 OR10AC1Q8NH08 325 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 RGP1Q92546 391 aaPredicted RBP8.52□□□□□ -1.05
USP3-216ENST00000559873 ADAT3Q96EY9 351 aaPredicted RBP8.52□□□□□ -1.05
USP3-216ENST00000559873 OPALINQ96PE5 141 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 TMED9Q9BVK6 235 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 TLNRD1Q9H1K6 362 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 ZCCHC4Q9H5U6 513 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 UFSP2Q9NUQ7 469 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 C1orf123Q9NWV4 160 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 RNF7Q9UBF6 113 aa8.52□□□□□ -1.05
USP3-216ENST00000559873 SIRT4Q9Y6E7 314 aaPredicted RBP8.52□□□□□ -1.05
USP3-216ENST00000559873 TEX15Q9BXT5 2789 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 TRBV5-5A0A0J9YX44 114 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 FAM230AA0A1W2PPH8 454 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 A6NIN4 97 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 ZNF879B4DU55 563 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 ZNF732B4DXR9 585 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 J3QT63 122 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 CCRL2O00421 344 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 RP2O75695 350 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 ALX3O95076 343 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 HCKP08631 526 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 ATF1P18846 271 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 FSTP19883 344 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 COL8A2P25067 703 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 AZGP1P25311 298 aaKnown RBP8.51□□□□□ -1.05
USP3-216ENST00000559873 GABRA5P31644 462 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 HAAOP46952 286 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 KCNJ8Q15842 424 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 NEDD8Q15843 81 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 ARMCX4Q5H9R4 360 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 SPNS3Q6ZMD2 512 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 KRTAP1-3Q8IUG1 177 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 SPICQ8N5J4 248 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 WFDC11Q8NEX6 87 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 OR10Z1Q8NGY1 313 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 ZNF671Q8TAW3 534 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 TRMT10AQ8TBZ6 339 aaKnown RBP8.51□□□□□ -1.05
USP3-216ENST00000559873 NPRL2Q8WTW4 380 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 YIPF5Q969M3 257 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 OR14A2Q96R54 314 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 BPESC1Q9GZL8 116 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 SLITRK2Q9H156 845 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 NDUFB11Q9NX14 153 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 NPTNQ9Y639 398 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 PDZD2O15018 2839 aa8.51□□□□□ -1.05
USP3-216ENST00000559873 IGHV4-30-2A0A087WSY4 118 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 IGHV3-64DA0A0J9YX35 117 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 LOC100289279A0A1B0GTE1 492 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 PQLC2LA1A4F0 135 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 ISPDA4D126 451 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 LYNX1G3V0Z9 82 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 TMEM178BH3BS89 294 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 CDIPTO14735 213 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 LMX1BO60663 402 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 ARL6IP5O75915 188 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 RGS9O75916 674 aaPredicted RBP8.5□□□□□ -1.05
USP3-216ENST00000559873 LYNX1P0DP58 116 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 PCMT1P22061 227 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 THBS2P35442 1172 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 MDH2P40926 338 aaKnown RBP8.5□□□□□ -1.05
USP3-216ENST00000559873 NR4A2P43354 598 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 MTCP1P56278 107 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 BTG1P62324 171 aa8.5□□□□□ -1.05
USP3-216ENST00000559873 RIN1Q13671 783 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms