RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 ZNF787Q6DD87 383 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 ASPHD2Q6ICH7 369 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 SLC16A12Q6ZSM3 486 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 LHFPL2Q6ZUX7 228 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 TPRA1Q86W33 373 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 CLVS1Q8IUQ0 354 aaPredicted RBP11.81□□□□□ -0.52
C9orf3-221ENST00000489562 CDH26Q8IXH8 852 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 OR10AD1Q8NGE0 317 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 HPSE2Q8WWQ2 592 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 BORCS8Q96FH0 119 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 TRMT61AQ96FX7 289 aaKnown RBP11.81□□□□□ -0.52
C9orf3-221ENST00000489562 RNF170Q96K19 258 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 EGLN1Q9GZT9 426 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 RAB1BQ9H0U4 201 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 CXorf56Q9H5V9 222 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 IL19Q9UHD0 177 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 DYSFO75923 2080 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 IGKV1-9A0A0C4DH69 117 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 HCKP08631 526 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 PRF1P14222 555 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 TNFRSF1AP19438 455 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 RANBP1P43487 201 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 RBP2P50120 134 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 PSMD7P51665 324 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 ATP1B3P54709 279 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 TNFAIP6P98066 277 aaPredicted RBP11.8□□□□□ -0.52
C9orf3-221ENST00000489562 FAM76BQ5HYJ3 339 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 NEU4Q8WWR8 484 aaPredicted RBP11.8□□□□□ -0.52
C9orf3-221ENST00000489562 IGFBPL1Q8WX77 278 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 GTF3AQ92664 365 aaKnown RBP11.8□□□□□ -0.52
C9orf3-221ENST00000489562 RPL3LQ92901 407 aaKnown RBP11.8□□□□□ -0.52
C9orf3-221ENST00000489562 ERGIC1Q969X5 290 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 CCL19Q99731 98 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 CENPOQ9BU64 300 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 CACNG6Q9BXT2 260 aa11.8□□□□□ -0.52
C9orf3-221ENST00000489562 PPIL3Q9H2H8 161 aaKnown RBP11.8□□□□□ -0.52
C9orf3-221ENST00000489562 DCHS2Q6V1P9 2916 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 PQLC2LA1A4F0 135 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 LRP5LA4QPB2 252 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 TRIM64BA6NI03 449 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 ZNF732B4DXR9 585 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 F5H5P2 479 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 H0YL77 283 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 ZNF701M0R085 212 aaPredicted RBP11.79□□□□□ -0.52
C9orf3-221ENST00000489562 OVOL3O00110 214 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 PTBP3O95758 552 aaKnown RBP11.79□□□□□ -0.52
C9orf3-221ENST00000489562 GATA4P43694 442 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 CTF1Q16619 201 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 GLT8D1Q68CQ7 371 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 ZNF573Q86YE8 665 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 OR51A2Q8NGJ7 313 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 TRMT10AQ8TBZ6 339 aaKnown RBP11.79□□□□□ -0.52
C9orf3-221ENST00000489562 DVL3Q92997 716 aaPredicted RBP11.79□□□□□ -0.52
C9orf3-221ENST00000489562 FOXRED1Q96CU9 486 aaPredicted RBP11.79□□□□□ -0.52
C9orf3-221ENST00000489562 ORAI1Q96D31 301 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 MEGF10Q96KG7 1140 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 OR2V2Q96R30 315 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 VRK1Q99986 396 aaPredicted RBP11.79□□□□□ -0.52
C9orf3-221ENST00000489562 SAP30LQ9HAJ7 183 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 BATF3Q9NR55 127 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 DECR2Q9NUI1 292 aa11.79□□□□□ -0.52
C9orf3-221ENST00000489562 FAM230AA0A1W2PPH8 454 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 IFNL4K9M1U5 179 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 SLC22A1O15245 554 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 TPD52L2O43399 206 aaKnown RBP11.78□□□□□ -0.52
C9orf3-221ENST00000489562 MAS1P04201 325 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 THBS2P35442 1172 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 GPM6AP51674 278 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 MTCP1P56278 107 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 LSM3P62310 102 aaKnown RBP11.78□□□□□ -0.52
C9orf3-221ENST00000489562 CCL8P80075 99 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 MAB21L1Q13394 359 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 DDI2Q5TDH0 399 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 HIST2H2BCQ6DN03 193 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 LRRTM1Q86UE6 522 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 PNLDC1Q8NA58 520 aaKnown RBP11.78□□□□□ -0.52
C9orf3-221ENST00000489562 NPRL2Q8WTW4 380 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 ITLN1Q8WWA0 313 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 ISOC1Q96CN7 298 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 UQCC2Q9BRT2 126 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 NAA50Q9GZZ1 169 aaKnown RBP11.78□□□□□ -0.52
C9orf3-221ENST00000489562 TPK1Q9H3S4 243 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 METTL17Q9H7H0 456 aaPredicted RBP11.78□□□□□ -0.52
C9orf3-221ENST00000489562 PPP1R3EQ9H7J1 279 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 CEPT1Q9Y6K0 416 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 CRYBG3Q68DQ2 2970 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 USF3Q68DE3 2245 aa11.78□□□□□ -0.52
C9orf3-221ENST00000489562 SPG11Q96JI7 2443 aa11.77□□□□□ -0.52
C9orf3-221ENST00000489562 CCDC160A6NGH7 325 aa11.77□□□□□ -0.53
C9orf3-221ENST00000489562 J3QT63 122 aa11.77□□□□□ -0.53
C9orf3-221ENST00000489562 IL1AP01583 271 aa11.77□□□□□ -0.53
C9orf3-221ENST00000489562 RAB3BP20337 219 aa11.77□□□□□ -0.53
C9orf3-221ENST00000489562 SDC2P34741 201 aa11.77□□□□□ -0.53
C9orf3-221ENST00000489562 ZNF93P35789 620 aaPredicted RBP11.77□□□□□ -0.53
C9orf3-221ENST00000489562 VBP1P61758 197 aa11.77□□□□□ -0.53
C9orf3-221ENST00000489562 MRPS11P82912 194 aaKnown RBP11.77□□□□□ -0.53
C9orf3-221ENST00000489562 ZNF154Q13106 437 aa11.77□□□□□ -0.53
C9orf3-221ENST00000489562 KISS1Q15726 138 aa11.77□□□□□ -0.53
C9orf3-221ENST00000489562 USP43Q70EL4 1123 aa11.77□□□□□ -0.53
C9orf3-221ENST00000489562 OR52N4Q8NGI2 321 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms